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[189558_at] terminase domain

Description C14H10.3 /REP_DB=WormBase Gene ID /WP=CE03020 /TR=Q17995 /GB=CAA90735.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=terminase domain
Cluster 6grp_highest_10_10 > 18      6grp_high1_10_10 > 70      6grp_highest_nonorm > 71      6grp_total > 81      4grp_total > 58      6grp_highest_sub > 04_05      6grp_high1_sub > 04      6grp_total_sub > Hat      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 350
1 2 3 4 range
A 229.8
(1.2)
P 		299.2
(3)
P 		260.1
(2)
P 		69.4
(-3)
A 		230
B 185
(-0)
A 		274.8
(2.3)
P 		303.3
(3)
P 		67.2
(-3)
A 		236
C 187.8
(-0.8)
M 		366.7
(2.2)
P 		412.2
(3)
P 		62.4
(-3)
A 		350
avr 200.9
(0.1) 		313.6
(2.7) 		325.2
(3) 		66.3
(-3) 		259

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 397
1 2 3 4 5 6 range
A 212.1
(-2.4)
P 		329.3
(0.3)
P 		313.8
(-0.1)
P 		444.7
(3)
P 		419
(2.4)
P 		187.3
(-3)
P 		257
B 278.5
(-1)
P 		316.1
(-0.4)
P 		304.5
(-0.6)
P 		539.5
(3)
P 		336.2
(-0.1)
P 		147.1
(-3)
P 		392
C 343.5
(1)
P 		304.8
(0.2)
P 		249
(-0.9)
P 		447.5
(3)
P 		327.8
(0.6)
P 		142.8
(-3)
P 		305
avr 278
(-0.8) 		316.7
(-0) 		289.1
(-0.5) 		477.2
(3) 		361
(0.8) 		159.1
(-3) 		318
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 133
1 2 3 4 range
A 83.7
(3)
P 		65
(1.5)
P 		68
(1.7)
P 		10.2
(-3)
A 		74
B 59
(1.8)
A 		67.9
(2.7)
P 		70.3
(3)
P 		14.3
(-3)
A 		56
C 62.2
(-0.7)
M 		105.4
(1.3)
P 		143.6
(3)
P 		10.5
(-3)
A 		133
avr 68.3
(1.1) 		79.4
(1.9) 		94
(3) 		11.7
(-3) 		82

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 104
1 2 3 4 5 6 range
A 39.1
(-3)
P 		117.1
(2.4)
P 		68.3
(-1)
P 		112.8
(2.1)
P 		126.5
(3)
P 		45.6
(-2.6)
P 		87
B 96.9
(-0.1)
P 		105.2
(0.4)
P 		73.9
(-1.7)
P 		142.9
(3)
P 		136.6
(2.6)
P 		54.8
(-3)
P 		88
C 127.3
(3)
P 		93
(0.4)
P 		63.4
(-1.8)
P 		90
(0.2)
P 		106.1
(1.4)
P 		47.8
(-3)
P 		80
avr 87.8
(0.1) 		105.1
(1.5) 		68.5
(-1.4) 		115.2
(2.4) 		123.1
(3) 		49.4
(-3) 		74
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189558_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16904
Sequence Type Exemplar sequence
Representative Public ID C14H10.3 NCBI
Target Description C14H10.3 /REP_DB=WormBase Gene ID /WP=CE03020 /TR=Q17995 /GB=CAA90735.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=terminase domain
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077317(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077317 NCBI Caenorhabditis elegans C14H10.3 (C14H10.3) mRNA, complete cds. 11/11 None
SNAP00000006388 ENSEMBL cdna:SNAP chromosome:CEL140:X:10221110:10223996:-1 11/11 None
GENEFINDER00000006392 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:10221110:10228064:-1 11/11 None
C14H10.3 ENSEMBL cdna:known chromosome:CEL140:X:10220587:10224479:-1 gene:C14H10.3 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:10221109-10224479(-) 100.0 100.0
Public Domain and Genome References
Gene Title terminase domain
Ensembl C14H10.3
Entrez Gene 181232 Entrez gene
SwissProt Q17995 EMBL-EBI
WormBase CE03020 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1599224_AT similar to CG1486-PA, isoform A cfa
CANINE_2:CFAAFFX.28664.1.S1_AT similar to CG1486-PA, isoform A cfa
CANINE_2:CFAAFFX.28669.1.S1_S_AT similar to CG1486-PA, isoform A cfa
DROSOPHILA_2:1636928_S_AT dm
DROSGENOME1:151790_AT dm
CHICKEN:GGA.11369.1.A1_AT similar to KIAA0251 protein gga
CHICKEN:GGA.19120.1.S1_AT similar to KIAA0251 protein gga
CHICKEN:GGAAFFX.25639.1.S1_AT similar to KIAA0251 protein gga
HG-U133A:212053_AT KIAA0251 protein hs
HG-U133_PLUS_2:212053_AT KIAA0251 protein hs
HG-U133A_2:212053_AT KIAA0251 protein hs
HG-U133_PLUS_2:232288_AT KIAA0251 protein hs
HG-U133B:232288_AT KIAA0251 protein hs
HG-U133_PLUS_2:229219_S_AT KIAA0251 protein hs
HG-U133B:229219_S_AT KIAA0251 protein hs
HU35KSUBA:D83838_AT KIAA0251 protein hs
HUGENEFL:D87438_AT KIAA0251 protein hs
U133_X3P:HS2.378192.1.S1_3P_S_AT KIAA0251 protein hs
U133_X3P:HS2.378192.1.S1_3P_AT KIAA0251 protein hs
U133_X3P:HS2.375549.1.S1_3P_AT KIAA0251 protein hs
U133_X3P:HS.170218.1.A1_3P_AT KIAA0251 protein hs
U133_X3P:HS.170218.0.A1_3P_AT KIAA0251 protein hs
U133_X3P:1560013_3P_AT KIAA0251 protein hs
HG-U133_PLUS_2:1555347_AT KIAA0251 protein hs
HG-U133_PLUS_2:1560013_AT KIAA0251 protein hs
HG-U133_PLUS_2:1560014_S_AT KIAA0251 protein hs
HG-U95AV2:40765_AT KIAA0251 protein hs
HU35KSUBC:RC_N70298_AT KIAA0251 protein hs
U133_X3P:HS2.431319.1.A1_3P_AT KIAA0251 protein hs
U133_X3P:HS.49829.0.A1_3P_AT KIAA0251 protein hs
HG-U133_PLUS_2:1558430_AT KIAA0251 protein hs
HG-U133_PLUS_2:237354_AT KIAA0251 protein hs
HG-U133B:237354_AT KIAA0251 protein hs
HG-U95C:53252_AT KIAA0251 protein hs
HG-U95B:48369_AT KIAA0251 protein hs
HG-U95B:48370_G_AT KIAA0251 protein hs
HG-U95B:59401_AT KIAA0251 protein hs
HG-U95E:83620_AT KIAA0251 protein hs
HG-U95E:91059_AT KIAA0251 protein hs
HU35KSUBD:RC_AA292706_AT KIAA0251 protein hs
HU35KSUBD:RC_AA400128_AT KIAA0251 protein hs
U133_X3P:HS.165328.0.A1_3P_AT KIAA0251 protein hs
MG-U74AV2:97713_AT expressed sequence AA415817 mm
MOE430A:1419327_AT expressed sequence AA415817 mm
MOUSE430_2:1419327_AT expressed sequence AA415817 mm
MOUSE430A_2:1419327_AT expressed sequence AA415817 mm
MOE430A:1436372_A_AT expressed sequence AA415817 mm
MOUSE430A_2:1436372_A_AT expressed sequence AA415817 mm
MOUSE430_2:1436372_A_AT expressed sequence AA415817 mm
MU11KSUBA:AA060904_AT expressed sequence AA415817 mm
MU11KSUBA:AA415817_RC_AT expressed sequence AA415817 mm
MG-U74AV2:94312_AT expressed sequence AA415817 mm
MG-U74AV2:160163_AT expressed sequence AA415817 mm
MOE430A:1452705_AT expressed sequence AA415817 mm
MOUSE430A_2:1452705_AT expressed sequence AA415817 mm
MOUSE430_2:1452705_AT expressed sequence AA415817 mm
MU19KSUBA:TC24798_AT Expressed sequence AA415817 (AA415817), transcript variant 1, mRNA mm
MU19KSUBB:TC28131_AT Expressed sequence AA415817 (AA415817), transcript variant 1, mRNA mm
RG-U34B:RC_AA956381_AT similar to expressed sequence AA415817 rn
RAE230A:1374197_AT Similar to expressed sequence AA415817 rn
RAT230_2:1374197_AT Similar to expressed sequence AA415817 rn
RAE230B:1391968_AT Similar to expressed sequence AA415817 rn
RAT230_2:1391968_AT Similar to expressed sequence AA415817 rn
Protein Similarities
Method ID Description E-Value
blast CAA90735 Hypothetical protein C14H10.3 [Caenorhabditis elegans] ref|NP_509718.1| C14H10.3 [Caenorhabditis elegans] 0.0
blast CAE70549 Hypothetical protein CBG17192 [Caenorhabditis briggsae] 0.0
blast XP_393418 PREDICTED: similar to GA13300-PA [Apis mellifera] 1.0E-60
blast XP_393418 PREDICTED: similar to GA13300-PA [Apis mellifera] 2.0E-60
Sequence
Target Sequence 
>C. ELEGANS:189558_AT
gaaacaacaaatctcgcatcttaacttggagctcgtgcatcaattgaaaagcgtcgacgc
agctttctcttccggagactgcactcgttatggcgtctcttgtgtcaagtttggcatgct
ttctgacgtgaaagatttgcataacttggtcgaaatggtggctcaaaagggaaaagagat
tgaaaacagccaacagtatttggacagcctcgcgcatttgataagacaaggaatcgaggc
cgcaaatgaggcactgagaaaggaaaatgatcagagacttcaaaatgagggaatgatgag
acagttgccaataatgggttctttggttaattggtggtctccattgactccagaatcaca
aaatatcagaggaagagctttcaatctgaagacaggagaaatgcaagaaactgatgtact
tttcaaatcaaagaaaaacatggacgccactccaccaatcacaaaaaatgaaactccaca
aattccacacgagc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAACAACAAATCTCGCATCTTAAC 424 355 1905 Antisense
CATCTTAACTTGGAGCTCGTGCATC 208 213 1921 Antisense
AAAAGCGTCGACGCAGCTTTCTCTT 7 133 1951 Antisense
GGAGACTGCACTCGTTATGGCGTCT 504 519 1978 Antisense
GGCGTCTCTTGTGTCAAGTTTGGCA 171 541 1996 Antisense
AAGTTTGGCATGCTTTCTGACGTGA 210 157 2011 Antisense
CAACAGTATTTGGACAGCCTCGCGC 570 189 2095 Antisense
ACAGCCTCGCGCATTTGATAAGACA 366 109 2108 Antisense
TAATTGGTGGTCTCCATTGACTCCA 448 627 2232 Antisense
GCCACTCCACCAATCACAAAAAATG 461 279 2350 Antisense
GAAACTCCACAAATTCCACACGAGC 24 357 2374 Antisense
Sequence Source Affymetrix Proprietary Database