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[189555_at] YL-1 protein like

Description C17E4.6 /REP_DB=WormBase Gene ID /WP=CE25780 /TR=Q93230 /GB=CAB02747.2 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=YL-1 protein like
Cluster 6grp_highest_10_10 > 83      6grp_high1_10_10 > 38      4grp_highest_8_8 > 50      4grp_high_8_8 > 40      6grp_highest_nonorm > 70      6grp_total > 38      4grp_total > 55      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 235
1 2 3 4 range
A 357.3
(3)
P 		205.3
(-3)
P 		271.3
(-0.4)
P 		259.9
(-0.8)
P 		152
B 440.6
(3)
P 		291.2
(-1.4)
P 		276.5
(-1.9)
P 		238.9
(-3)
P 		202
C 425.6
(3)
P 		287.3
(-1.8)
P 		298.9
(-1.4)
P 		254.5
(-3)
P 		171
avr 407.8
(3) 		261.3
(-2.6) 		282.2
(-1.8) 		251.1
(-3) 		157

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 302
1 2 3 4 5 6 range
A 381.2
(0.7)
P 		317.1
(-0.8)
P 		228.3
(-2.8)
P 		219.4
(-3)
P 		258.9
(-2.1)
P 		484.2
(3)
P 		265
B 511.8
(3)
P 		312.5
(-1)
P 		211
(-3)
P 		265.2
(-1.9)
P 		232.3
(-2.6)
P 		343
(-0.4)
P 		301
C 512.5
(3)
P 		269.7
(-2.1)
P 		227.7
(-3)
P 		269.4
(-2.1)
P 		245.5
(-2.6)
P 		330.8
(-0.8)
P 		285
avr 468.5
(3) 		299.8
(-1.1) 		222.3
(-3) 		251.3
(-2.3) 		245.6
(-2.4) 		386
(1) 		246
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 103
1 2 3 4 range
A 130.1
(3)
P 		44.6
(-2.6)
P 		70.9
(-0.9)
P 		38
(-3)
P 		92
B 140.5
(3)
P 		71.9
(-1.6)
P 		64.1
(-2.1)
P 		50.9
(-3)
P 		90
C 140.9
(3)
P 		82.6
(-0.6)
P 		104.2
(0.8)
P 		42.9
(-3)
P 		98
avr 137.2
(3) 		66.4
(-1.6) 		79.7
(-0.7) 		43.9
(-3) 		93

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 140
1 2 3 4 5 6 range
A 70.3
(-1.2)
P 		112.8
(2.6)
P 		49.7
(-3)
P 		55.6
(-2.5)
P 		78.1
(-0.5)
P 		117.9
(3)
P 		68
B 178.1
(3)
P 		104
(-0.5)
P 		51.2
(-3)
P 		70.2
(-2.1)
P 		94.4
(-1)
P 		127.9
(0.6)
P 		127
C 190
(3)
P 		82.3
(-1.8)
P 		58
(-2.8)
P 		54.2
(-3)
P 		79.5
(-1.9)
P 		110.7
(-0.5)
P 		136
avr 146.1
(3) 		99.7
(0) 		53
(-3) 		60
(-2.5) 		84
(-1) 		118.8
(1.2) 		93
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189555_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1405
Sequence Type Exemplar sequence
Representative Public ID C17E4.6 NCBI
Target Description C17E4.6 /REP_DB=WormBase Gene ID /WP=CE25780 /TR=Q93230 /GB=CAB02747.2 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=YL-1 protein like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060104(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060104 NCBI Caenorhabditis elegans C17E4.6 (C17E4.6) mRNA, complete cds. 11/11 None
GENEFINDER00000000962 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:9430690:9438710:1 11/11 None
SNAP00000000954 ENSEMBL cdna:SNAP chromosome:CEL140:I:9437820:9438710:1 9/11 None
C17E4.6 ENSEMBL cdna:known chromosome:CEL140:I:9430680:9439236:1 gene:C17E4.6 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000000953 2/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:9430620-9438641(+) 100.0 100.0
Public Domain and Genome References
Gene Title YL-1 protein like
Ensembl C17E4.6
Entrez Gene 172769 Entrez gene
SwissProt Q93230 EMBL-EBI
WormBase CE25780 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
45449 regulation of transcription inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3677 DNA binding inferred from electronic annotation QuickGO AmiGO
3700 transcription factor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB02747 Hypothetical protein C17E4.6 [Caenorhabditis elegans] ref|NP_492505.1| C17E4.6 [Caenorhabditis elegans] 0.0
blast CAE60186 Hypothetical protein CBG03742 [Caenorhabditis briggsae] 1.0E-87
blast CAB02747 Hypothetical protein C17E4.6 [Caenorhabditis elegans] ref|NP_492505.1| C17E4.6 [Caenorhabditis elegans] 4.0E-52
blast CAE60187 Hypothetical protein CBG03744 [Caenorhabditis briggsae] 2.0E-34
blast CAE60187 Hypothetical protein CBG03744 [Caenorhabditis briggsae] 1.0E-33
Protein Domains
Database ID Description E-Value
Pfam IPR008895 EMBL-EBI YL1 nuclear 3.5E-44
Pfam IPR008895 EMBL-EBI YL1 nuclear 8.1E-35
Pfam IPR008895 EMBL-EBI YL1 nuclear 1.1E-29
Pfam IPR008895 EMBL-EBI YL1 nuclear 1.1E-29
Sequence
Target Sequence 
>C. ELEGANS:189555_AT
aacacagttcgtgtatttcctcctggaccaagagagcagataaaaatgactgaaagtgga
actactattactctgtctgaaataaagactttcaaatgcgagcgtccacgagaacgaaat
ttgtgtgcagtaaccggacgtccagctcgatatctcgatccagtgacacgactaccatat
tcaacggcatatgcattcaaagtgattcgggatagatatcacaaacatcttcgaagtatt
cgtggaaatgatgaggtgacgacctacctgaaaagcctgaaggctctaccatctccacag
atttctccaagagttcccttattgacaactggaccgatcacatctggaccacttgttgct
t

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACACAGTTCGTGTATTTCCTCCTG 571 133 763 Antisense
GTGGAACTACTATTACTCTGTCTGA 512 491 818 Antisense
ACTTTCAAATGCGAGCGTCCACGAG 205 103 850 Antisense
ATTTGTGTGCAGTAACCGGACGTCC 662 17 881 Antisense
TCCAGCTCGATATCTCGATCCAGTG 680 587 903 Antisense
GACACGACTACCATATTCAACGGCA 333 347 927 Antisense
TGACGACCTACCTGAAAAGCCTGAA 620 567 1019 Antisense
AAAGCCTGAAGGCTCTACCATCTCC 397 125 1034 Antisense
CCATCTCCACAGATTTCTCCAAGAG 550 271 1051 Antisense
GACAACTGGACCGATCACATCTGGA 451 365 1086 Antisense
ATCACATCTGGACCACTTGTTGCTT 649 27 1099 Antisense
Sequence Source Affymetrix Proprietary Database