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[189554_at] sugar transporter

Description C13C4.5 /REP_DB=WormBase Gene ID /WP=CE08130 /TR=O01927 /GB=CAB07311.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=sugar transporter
Cluster 6grp_highest_10_10 > 26      6grp_high1_10_10 > 51      4grp_highest_8_8 > 33      4grp_high_8_8 > 58      6grp_highest_nonorm > 52      6grp_total > 30      4grp_total > 61      6grp_highest_sub > 03      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 674
1 2 3 4 range
A 744.8
(3)
P 		618.8
(1.6)
P 		611
(1.5)
P 		196.7
(-3)
P 		548
B 741.5
(3)
P 		502.7
(0.5)
P 		740.6
(3)
P 		168.5
(-3)
P 		573
C 842.3
(3)
P 		502.3
(-0.5)
P 		611.6
(0.6)
P 		256.4
(-3)
P 		586
avr 776.2
(3) 		541.3
(0.5) 		654.4
(1.7) 		207.2
(-3) 		569

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 544
1 2 3 4 5 6 range
A 541.7
(-1.3)
P 		630.2
(-0)
P 		850.2
(3)
P 		644.3
(0.2)
P 		535.4
(-1.4)
P 		416.7
(-3)
P 		434
B 511
(-1.9)
P 		760.2
(0.9)
P 		952.4
(3)
P 		703.5
(0.3)
P 		599.7
(-0.9)
P 		408.9
(-3)
P 		544
C 513.9
(-2.4)
P 		707.4
(0.7)
P 		605.5
(-0.9)
P 		850.6
(3)
P 		475
(-3)
P 		517.5
(-2.3)
P 		376
avr 522.2
(-1.7) 		699.3
(1.3) 		802.7
(3) 		732.8
(1.8) 		536.7
(-1.5) 		447.7
(-3) 		355
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 250
1 2 3 4 range
A 271.2
(3)
P 		134.3
(-0.4)
P 		159.7
(0.2)
P 		28.8
(-3)
P 		242
B 236.5
(3)
P 		124.1
(-0.4)
P 		171.6
(1.1)
P 		35.9
(-3)
P 		201
C 278.8
(3)
P 		144.4
(-0.4)
P 		213.2
(1.3)
P 		43.2
(-3)
P 		236
avr 262.2
(3) 		134.3
(-0.4) 		181.5
(0.9) 		36
(-3) 		226

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 153
1 2 3 4 5 6 range
A 99.9
(-3)
P 		224.1
(3)
P 		185.2
(1.1)
P 		163.4
(0.1)
P 		161.6
(-0)
P 		101.5
(-2.9)
P 		124
B 177.8
(-1.5)
P 		253
(3)
P 		231.3
(1.7)
P 		186.3
(-1)
P 		243.7
(2.4)
P 		152.5
(-3)
P 		101
C 190.5
(0.5)
P 		215.9
(3)
P 		154.1
(-3)
P 		171.1
(-1.3)
P 		153.7
(-3)
P 		173.2
(-1.1)
P 		62
avr 156.1
(-2.1) 		231
(3) 		190.2
(0.2) 		173.6
(-0.9) 		186.3
(-0) 		142.4
(-3) 		89
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189554_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14190
Sequence Type Exemplar sequence
Representative Public ID C13C4.5 NCBI
Target Description C13C4.5 /REP_DB=WormBase Gene ID /WP=CE08130 /TR=O01927 /GB=CAB07311.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=sugar transporter
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073640(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073640 NCBI Caenorhabditis elegans C13C4.5 (C13C4.5) mRNA, complete cds. 11/11 None
SNAP00000013563 ENSEMBL cdna:SNAP chromosome:CEL140:V:12117589:12119885:1 11/11 None
GENEFINDER00000013573 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:12117589:12119885:1 11/11 None
C13C4.5.2 ENSEMBL cdna:known chromosome:CEL140:V:12117572:12120014:1 gene:C13C4.5 11/11 None
C13C4.5.1 ENSEMBL cdna:known chromosome:CEL140:V:12117581:12120022:1 gene:C13C4.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:12117588-12119885(+) 100.0 100.0
Public Domain and Genome References
Gene Title sugar transporter
Ensembl C13C4.5
Entrez Gene 179662 Entrez gene
SwissProt O01927 EMBL-EBI
WormBase CE08130 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFA.18813.1.S1_AT similar to spinster-like cfa
CANINE_2:CFAAFFX.23449.1.S1_AT similar to spinster-like cfa
CHICKEN:GGAAFFX.927.1.S1_AT similar to BC011467 protein gga
CHICKEN:GGAAFFX.927.2.S1_AT similar to BC011467 protein gga
CHICKEN:GGAAFFX.927.2.S1_S_AT similar to BC011467 protein gga
CHICKEN:GGAAFFX.927.3.S1_S_AT similar to BC011467 protein gga
MOUSE430_2:1451601_A_AT cDNA sequence BC011467 mm
MOE430A:1451601_A_AT cDNA sequence BC011467 mm
MOUSE430A_2:1451601_A_AT cDNA sequence BC011467 mm
MU19KSUBB:TC34332_AT CDNA sequence BC011467, mRNA (cDNA clone MGC:37865 IMAGE:5100525) mm
MU19KSUBB:TC34332_G_AT CDNA sequence BC011467, mRNA (cDNA clone MGC:37865 IMAGE:5100525) mm
RG-U34C:RC_AA859323_AT similar to spinster-like protein (predicted) rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6810 transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5215 transporter activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB07311 Hypothetical protein C13C4.5 [Caenorhabditis elegans] ref|NP_506041.1| C13C4.5 [Caenorhabditis elegans] 0.0
blast CAE75396 Hypothetical protein CBG23385 [Caenorhabditis briggsae] 0.0
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506041.1 12 52-74,94-116,123-145,150-172,185-207,217-235,273-295,317-339,360-382,392-414,427-449,464-486
C13C4.5.2 12 52-74,94-116,123-145,150-172,185-207,217-235,273-295,317-339,360-382,392-414,427-449,464-486
C13C4.5.1 12 52-74,94-116,123-145,150-172,185-207,217-235,273-295,317-339,360-382,392-414,427-449,464-486
SNAP00000013563 12 52-74,94-116,123-145,150-172,185-207,217-235,273-295,317-339,360-382,392-414,427-449,464-486
GENEFINDER00000013573 12 52-74,94-116,123-145,150-172,185-207,217-235,273-295,317-339,360-382,392-414,427-449,464-486
Sequence
Target Sequence 
>C. ELEGANS:189554_AT
gcactcacttgtgttggtggcgttcttggtgttgctattggtacattggtttcaaatatg
tggtctcgtggagttggtccttttaagcacattcaaacagttcgtgcagatgctcttgtc
tgtgctatcggagcagcaatttgcattccaacactcattcttgctattcaaaacattgag
agcaacatgaattttgcttggggaatgttatttatttgcattgtcgccagtagttttaac
tgggctacaaatgtcgatctgttactgagtgtggtagttcctcagagaagaagttcagcc
tcatcatggcaaattttaatttctcatatgtttggagatgcttctggtccttacattctg
ggattgatatcagatgcaatcagaggcaatgaagatacggcacaggctcattataaatca
ttggtcacctcattttggttgtgtgttggaactttggtgttgtcagttattctatttgga
atatcagcaataacagttgtaaaagataaagccagattcaacgaaattatgttggcacaa
gctaacaaggacaacacatcaagcgggacact

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCACTCACTTGTGTTGGTGGCGTTC 644 315 979 Antisense
GCGTTCTTGGTGTTGCTATTGGTAC 681 289 998 Antisense
TGGTCTCGTGGAGTTGGTCCTTTTA 222 553 1039 Antisense
GCAGATGCTCTTGTCTGTGCTATCG 229 313 1084 Antisense
GCAGCAATTTGCATTCCAACACTCA 409 313 1111 Antisense
TTCCAACACTCATTCTTGCTATTCA 662 699 1124 Antisense
GAAGAAGTTCAGCCTCATCATGGCA 156 341 1265 Antisense
CTTCTGGTCCTTACATTCTGGGATT 54 221 1319 Antisense
GAAGATACGGCACAGGCTCATTATA 58 339 1369 Antisense
AAATCATTGGTCACCTCATTTTGGT 21 115 1393 Antisense
AGGACAACACATCAAGCGGGACACT 385 55 1526 Antisense
Sequence Source Affymetrix Proprietary Database