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[189553_s_at] SD22 like protein

Description F13E9.1 /REP_DB=WormBase Gene ID /WP=CE05603 /TR=Q19407 /GB=CAA93405.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=SD22 like protein
Cluster 6grp_highest_10_10 > 98      6grp_high1_10_10 > 89      4grp_highest_8_8 > 55      4grp_high_8_8 > 11      6grp_highest_nonorm > 90      6grp_total > 89      4grp_total > 21      6grp_highest_sub > Cu      6grp_high1_sub > Cu      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 150
1 2 3 4 range
A 155.4
(-0.3)
P 		147
(-0.7)
P 		97.4
(-3)
P 		224.1
(3)
P 		127
B 123.4
(0.9)
P 		106.9
(-0.4)
P 		74
(-3)
P 		149.6
(3)
P 		76
C 171
(1.9)
P 		124.2
(-1.7)
P 		106.9
(-3)
P 		185.8
(3)
P 		79
avr 149.9
(0.7) 		126
(-0.9) 		92.8
(-3) 		186.5
(3) 		94

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 109
1 2 3 4 5 6 range
A 111.4
(-3)
P 		119
(-2.5)
P 		115.5
(-2.7)
P 		160.7
(0.2)
P 		203.6
(3)
P 		181.3
(1.5)
P 		92
B 129.9
(-0.7)
P 		130.3
(-0.7)
P 		94.4
(-3)
P 		105.5
(-2.3)
P 		185.1
(2.8)
P 		188.9
(3)
P 		95
C 178.7
(3)
P 		141.9
(-0.9)
P 		122.5
(-3)
P 		127.7
(-2.4)
P 		161.1
(1.1)
P 		176.2
(2.7)
P 		56
avr 140
(-0.6) 		130.4
(-1.4) 		110.8
(-3) 		131.3
(-1.3) 		183.3
(3) 		182.1
(2.9) 		73
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 39
1 2 3 4 range
A 56.6
(3)
P 		31.9
(-1.8)
P 		25.5
(-3)
P 		32.8
(-1.6)
P 		31
B 39.3
(3)
P 		26.4
(-0.5)
P 		17.2
(-3)
P 		31.9
(1)
P 		22
C 56.6
(3)
P 		35.7
(-2)
P 		37.3
(-1.6)
P 		31.3
(-3)
P 		25
avr 50.8
(3) 		31.3
(-1.9) 		26.7
(-3) 		32
(-1.7) 		24

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 55
1 2 3 4 5 6 range
A 20.5
(-3)
P 		42.3
(0.2)
P 		25.2
(-2.3)
P 		40.8
(-0)
P 		61.4
(3)
P 		44.1
(0.5)
P 		41
B 45.2
(-0.4)
P 		43.4
(-0.6)
P 		22.9
(-3)
P 		27.9
(-2.4)
P 		75.2
(3)
P 		70.5
(2.5)
P 		52
C 66.2
(3)
P 		43.3
(-0.4)
P 		31.2
(-2.2)
P 		25.7
(-3)
P 		52.1
(0.9)
P 		59
(1.9)
P 		41
avr 44
(-0.1) 		43
(-0.3) 		26.4
(-3) 		31.5
(-2.2) 		62.9
(3) 		57.9
(2.2) 		37
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 189553_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8431
Sequence Type Exemplar sequence
Representative Public ID F13E9.1 NCBI
Target Description F13E9.1 /REP_DB=WormBase Gene ID /WP=CE05603 /TR=Q19407 /GB=CAA93405.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=SD22 like protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069615(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069615 NCBI Caenorhabditis elegans F13E9.1 (F13E9.1) mRNA, complete cds. 11/11 None
SNAP00000017037 ENSEMBL cdna:SNAP chromosome:CEL140:IV:10870600:10873084:1 11/11 None
GENEFINDER00000017059 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:10870600:10873307:1 11/11 None
F13E9.1 ENSEMBL cdna:known chromosome:CEL140:IV:10864302:10873579:1 gene:F13E9.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:10870605-10873090(+) 100.0 100.0
Public Domain and Genome References
Gene Title SD22 like protein
Ensembl F13E9.1
Entrez Gene 177981 Entrez gene
SwissProt Q19407 EMBL-EBI
WormBase CE33773 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1604217_AT similar to nischarin cfa
CANINE_2:CFA.4335.1.S1_AT similar to nischarin cfa
CANINE_2:CFAAFFX.14812.1.S1_S_AT similar to nischarin cfa
CANINE_2:CFAAFFX.14821.1.S1_AT similar to nischarin cfa
CANINE_2:CFAAFFX.14821.1.S1_S_AT similar to nischarin cfa
DROSOPHILA_2:1628627_AT dm
DROSGENOME1:141574_AT dm
CHICKEN:GGA.15836.1.S1_S_AT similar to KIAA0975 protein gga
CHICKEN:GGA.3001.1.S1_AT similar to KIAA0975 protein gga
CHICKEN:GGAAFFX.24344.1.S1_S_AT similar to KIAA0975 protein gga
HG-U133A:201591_S_AT nischarin hs
HG-U133_PLUS_2:201591_S_AT nischarin hs
HG-FOCUS:201591_S_AT nischarin hs
HG-U133A_2:201591_S_AT nischarin hs
HG-U133_PLUS_2:227392_AT nischarin hs
HG-U133B:227392_AT nischarin hs
HU35KSUBA:RC_AA425921_AT nischarin hs
HU35KSUBA:RC_AA426454_S_AT nischarin hs
HU35KSUBD:RC_R61742_S_AT nischarin hs
U133_X3P:G6005787_3P_S_AT nischarin hs
U133_X3P:HS.285418.0.S1_3P_AT nischarin hs
HG-U95AV2:33916_AT nischarin hs
HG-U95B:44768_AT nischarin hs
HG-U95D:72930_AT nischarin hs
RG-U34C:RC_AI171232_AT nischarin (predicted) rn
RAE230A:1371558_AT nischarin (predicted) rn
RAT230_2:1371558_AT nischarin (predicted) rn
RAE230B:1394957_AT nischarin (predicted) rn
RAT230_2:1394957_AT nischarin (predicted) rn
RAE230B:1384342_AT nischarin (predicted) rn
RAT230_2:1384342_AT nischarin (predicted) rn
RAE230A:1374566_AT Nischarin (predicted) rn
RAT230_2:1374566_AT Nischarin (predicted) rn
RAE230B:1382686_AT Nischarin (predicted) rn
RAT230_2:1382686_AT Nischarin (predicted) rn
RG-U34B:RC_AA943911_AT Nischarin (predicted) rn
RG-U34C:RC_AI101946_AT Nischarin (predicted) rn
RG-U34C:RC_AI237243_AT Nischarin (predicted) rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7242 intracellular signaling cascade inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA93405 Hypothetical protein F13E9.1 [Caenorhabditis elegans] emb|CAD89747.1| Hypothetical protein F13E9.1 [Caenorhabditis elegans] ref|NP_502016.2| F13E9.1 [Caenorhabditis elegans] 0.0
blast CAE70832 Hypothetical protein CBG17612 [Caenorhabditis briggsae] 1.0E-104
blast CAE70832 Hypothetical protein CBG17612 [Caenorhabditis briggsae] 1.0E-97
blast AAH91939 Si:ch211-103f16.1 protein [Danio rerio] 9.0E-74
Protein Domains
Database ID Description E-Value
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.19
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.024
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.01
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.19
Pfam IPR001683 EMBL-EBI Phox-like 1.7E-13
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.19
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.024
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.01
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.19
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.024
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.01
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.19
Sequence
Target Sequence 
>C. ELEGANS:189553_S_AT
aattggatctaatctcgctttcctttcatctttaactgaactcgacctttcaaacaatac
tttaacgaagattgatggttggaatgagaaacttggaaatatcaagaagctgatcctcag
tgaaaatgcaattgaagatctatcgggattgggaaaactgtattctctggaatatttaga
tgcaaaaggcaacaatattcaaaacctggatgctgttcaaggaattggaaaacttccatg
tcttgagattctattacttcgtgataatcctatcagaaaactggtcgaatacagaacaaa
agtcctggagctttttggagaacggagcagtgagctgaaattggatggaagacgtcctga
agcaagggaacttgatactgtacgcgtacgaatggcccttcgtaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATTGGATCTAATCTCGCTTTCCTT 192 179 822 Antisense
TCGCTTTCCTTTCATCTTTAACTGA 9 579 836 Antisense
CATCTTTAACTGAACTCGACCTTTC 295 211 848 Antisense
GAACTCGACCTTTCAAACAATACTT 304 349 859 Antisense
ATTCAAAACCTGGATGCTGTTCAAG 702 11 1018 Antisense
GGAAAACTTCCATGTCTTGAGATTC 628 527 1048 Antisense
TCTTGAGATTCTATTACTTCGTGAT 216 617 1062 Antisense
AGTCCTGGAGCTTTTTGGAGAACGG 671 59 1122 Antisense
GAAGACGTCCTGAAGCAAGGGAACT 565 337 1169 Antisense
GGGAACTTGATACTGTACGCGTACG 11 495 1187 Antisense
TACGCGTACGAATGGCCCTTCGTAA 59 649 1202 Antisense
Sequence Source Affymetrix Proprietary Database