[Home] | [Total List]

[189552_at] glycotransferase

Description T22D1.4 /REP_DB=WormBase Gene ID /WP=CE17248 /TR=Q9GZH4 /GB=AAF98626.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /DEF=glycotransferase
Cluster 6grp_highest_10_10 > 15      6grp_high1_10_10 > 40      4grp_highest_8_8 > 17      4grp_high_8_8 > 61      6grp_highest_nonorm > 47      6grp_total > 51      4grp_total > 59      6grp_highest_sub > 03      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2803
1 2 3 4 range
A 3483.4
(0.6)
P 		3869.1
(1.5)
P 		4479.9
(3)
P 		2005
(-3)
P 		2475
B 3484.7
(-0.8)
P 		4093.2
(0.9)
P 		4790.3
(3)
P 		2753.1
(-3)
P 		2037
C 3327
(-0.3)
P 		4159.2
(1.5)
P 		4808.2
(3)
P 		2123
(-3)
P 		2685
avr 3431.7
(-0.2) 		4040.5
(1.4) 		4692.8
(3) 		2293.7
(-3) 		2399

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1633
1 2 3 4 5 6 range
A 2839.7
(-1.9)
P 		3470.2
(1.5)
P 		3433.4
(1.3)
P 		3748.7
(3)
P 		2629.5
(-3)
P 		3185.2
(-0)
P 		1119
B 3068.8
(-0.6)
P 		3107
(-0.5)
P 		4050.7
(3)
P 		3479.4
(0.9)
P 		2417.9
(-3)
P 		2627
(-2.2)
P 		1633
C 3469.5
(0.6)
P 		3011.9
(-2)
P 		3900.2
(3)
P 		3478.1
(0.6)
P 		3051.8
(-1.8)
P 		2835.5
(-3)
P 		1065
avr 3126
(-0.7) 		3196.4
(-0.3) 		3794.8
(3) 		3568.7
(1.8) 		2699.7
(-3) 		2882.6
(-2) 		1095
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1382
1 2 3 4 range
A 1268.3
(3)
P 		839.9
(0.4)
P 		1171.1
(2.4)
P 		293.5
(-3)
P 		975
B 1111.2
(3)
P 		1010.9
(1.9)
P 		1110
(3)
P 		586.7
(-3)
P 		525
C 1101.3
(0.4)
P 		1195.8
(0.8)
P 		1675.8
(3)
P 		358
(-3)
P 		1318
avr 1160.3
(1.9) 		1015.5
(1) 		1319
(3) 		412.7
(-3) 		906

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 763
1 2 3 4 5 6 range
A 523.5
(-3)
P 		1234.2
(3)
P 		747.7
(-1.1)
P 		950.8
(0.6)
P 		793.5
(-0.7)
P 		775.5
(-0.9)
P 		711
B 1067.8
(3)
P 		1034.2
(1.6)
P 		983.6
(-0.5)
P 		921.6
(-3)
P 		982.4
(-0.5)
P 		979.6
(-0.6)
P 		146
C 1286
(3)
P 		919
(-0.8)
P 		992.7
(-0)
P 		699.5
(-3)
P 		987.5
(-0.1)
P 		949.2
(-0.4)
P 		587
avr 959.1
(-0) 		1062.5
(3) 		908
(-1.5) 		857.3
(-3) 		921.1
(-1.1) 		901.4
(-1.7) 		205
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189552_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10317
Sequence Type Exemplar sequence
Representative Public ID T22D1.4 NCBI
Target Description T22D1.4 /REP_DB=WormBase Gene ID /WP=CE17248 /TR=Q9GZH4 /GB=AAF98626.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /DEF=glycotransferase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068664(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068664 NCBI Caenorhabditis elegans T22D1.4 (glycotransferase) mRNA, complete cds. 11/11 None
SNAP00000024010 ENSEMBL cdna:SNAP chromosome:CEL140:IV:6910667:6912647:1 11/11 None
GENEFINDER00000024021 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:6910667:6912647:1 11/11 None
T22D1.4.2 ENSEMBL cdna:known chromosome:CEL140:IV:6910665:6912836:1 gene:T22D1.4 11/11 None
T22D1.4.1 ENSEMBL cdna:known chromosome:CEL140:IV:6910667:6912836:1 gene:T22D1.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:6910273-6912653(+) 100.0 100.0
Public Domain and Genome References
Gene Title glycotransferase
Ensembl T22D1.4
Entrez Gene 177456 Entrez gene
SwissProt Q9GZH4 EMBL-EBI
WormBase CE33704 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:259883_AT ribophorin I family protein at
CANINE:1592334_AT similar to Dolichyl-diphosphooligosaccharide--protein glycosyltransferase 67 kDa subunit precursor (Ribophorin I) (RPN-I) cfa
CANINE:1591705_AT similar to Dolichyl-diphosphooligosaccharide--protein glycosyltransferase 67 kDa subunit precursor (Ribophorin I) (RPN-I) cfa
CANINE:1592565_AT similar to Dolichyl-diphosphooligosaccharide--protein glycosyltransferase 67 kDa subunit precursor (Ribophorin I) (RPN-I) cfa
CANINE_2:CFA.9914.1.S1_A_AT similar to Dolichyl-diphosphooligosaccharide--protein glycosyltransferase 67 kDa subunit precursor (Ribophorin I) (RPN-I) cfa
CANINE_2:CFA.9914.1.S1_S_AT similar to Dolichyl-diphosphooligosaccharide--protein glycosyltransferase 67 kDa subunit precursor (Ribophorin I) (RPN-I) cfa
CANINE_2:CFA.9914.2.A1_S_AT similar to Dolichyl-diphosphooligosaccharide--protein glycosyltransferase 67 kDa subunit precursor (Ribophorin I) (RPN-I) cfa
CHICKEN:GGA.5939.1.S1_AT similar to Dolichyl-diphosphooligosaccharide--protein glycosyltransferase 67 kDa subunit precursor (Ribophorin I) (RPN-I) gga
HG-U133_PLUS_2:201011_AT ribophorin I hs
HG-U133A:201011_AT ribophorin I hs
HG-U133A_2:201011_AT ribophorin I hs
HG-FOCUS:201011_AT ribophorin I hs
HU35KSUBA:HUM_ALU_AT ribophorin I hs
HU35KSUBB:HUM_ALU_AT ribophorin I hs
HU35KSUBC:HUM_ALU_AT ribophorin I hs
HU35KSUBD:HUM_ALU_AT ribophorin I hs
HUGENEFL:HUM_ALU_AT ribophorin I hs
HC-G110:HUM_ALU_AT ribophorin I hs
HUGENEFL:Y00281_AT ribophorin I hs
U133_X3P:G4506674_3P_AT ribophorin I hs
HG-U95AV2:33424_AT ribophorin I hs
MOUSE430_2:1438943_X_AT ribophorin I mm
MOUSE430A_2:1438943_X_AT ribophorin I mm
MOE430A:1438943_X_AT ribophorin I mm
MU11KSUBA:AA268163_S_AT ribophorin I mm
MG-U74AV2:94237_AT ribophorin I mm
MOE430A:1456438_X_AT ribophorin I mm
MOUSE430A_2:1456438_X_AT ribophorin I mm
MOUSE430_2:1456438_X_AT ribophorin I mm
MOE430A:1439257_X_AT ribophorin I mm
MOUSE430A_2:1439257_X_AT ribophorin I mm
MOUSE430_2:1439257_X_AT ribophorin I mm
MOE430A:1416470_A_AT ribophorin I mm
MOUSE430A_2:1416470_A_AT ribophorin I mm
MOUSE430_2:1416470_A_AT ribophorin I mm
MOE430A:1448353_X_AT ribophorin I mm
MOUSE430A_2:1448353_X_AT ribophorin I mm
MOUSE430_2:1448353_X_AT ribophorin I mm
MOUSE430_2:1459778_AT Ribophorin I (Rpn1), mRNA mm
MOE430B:1459778_AT Ribophorin I (Rpn1), mRNA mm
RG-U34A:X05300_AT ribophorin I rn
RAE230A:1398766_AT ribophorin I rn
RAT230_2:1398766_AT ribophorin I rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6486 protein amino acid glycosylation inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5783 endoplasmic reticulum inferred from electronic annotation QuickGO AmiGO
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4579 dolichyl-diphosphooligosaccharide-protein glycotransferase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAF98626 Hypothetical protein T22D1.4 [Caenorhabditis elegans] ref|NP_501065.2| T22D1.4 [Caenorhabditis elegans] 0.0
blast CAE61758 Hypothetical protein CBG05717 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR007676 EMBL-EBI Ribophorin I 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_501065.2 1 423-442
T22D1.4.2 1 423-442
T22D1.4.1 1 423-442
SNAP00000024010 1 423-442
GENEFINDER00000024021 1 423-442
Sequence
Target Sequence 
>C. ELEGANS:189552_AT
agctcaagccaacatatctcgatactactggacgtcttgttcttgttctcgagaaggaaa
acattgtgccagaccacagtcagttcttcaccgtaacctatgagtttgaattcgtcgaca
tgctccgtgagccacttcttgcatctgcgttcttcttctcactattctttgtgatcattg
tttactccagatttgactttacaatttcatcggacccagcaaaggacgccgaagaacgat
cccaaatcatcctaggaaacctcgccaaatctgttgattctaagcaatctgcttatgaag
atcttattgaagcatcgcagcagtataagtctaccaagaatgatgccgatcttcaagagg
ccaagaagactttcattgctgctagaaaccaggaaaattctacgctcactgacaaaattg
cgaccctg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGCTCAAGCCAACATATCTCGATAC 665 77 1211 Antisense
ACTACTGGACGTCTTGTTCTTGTTC 354 101 1234 Antisense
TGCCAGACCACAGTCAGTTCTTCAC 61 587 1277 Antisense
AGTTCTTCACCGTAACCTATGAGTT 208 63 1292 Antisense
TTGAATTCGTCGACATGCTCCGTGA 195 703 1316 Antisense
GACTTTACAATTTCATCGGACCCAG 415 371 1405 Antisense
GGACGCCGAAGAACGATCCCAAATC 537 523 1434 Antisense
GAAACCTCGCCAAATCTGTTGATTC 157 359 1466 Antisense
ATGATGCCGATCTTCAAGAGGCCAA 400 45 1550 Antisense
GGCCAAGAAGACTTTCATTGCTGCT 330 543 1569 Antisense
GCTCACTGACAAAATTGCGACCCTG 382 301 1614 Antisense
Sequence Source Affymetrix Proprietary Database