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[189547_at] 7TM chemoreceptor, srh family

Description F37B4.13 /REP_DB=WormBase Gene ID /WP=CE24955 /GEN=srh-240 /GB=AAK18948.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster 6grp_total > 20      4grp_total > 04      6grp_cgc > 73      6grp_cgc_sub > 02_03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 66
1 2 3 4 range
A 6.5
(-2.6)
A 		13.3
(-1.9)
A 		1.7
(-3)
A 		67.3
(3)
A 		66
B 29.2
(3)
A 		7.3
(-3)
A 		26.4
(2.2)
A 		28.9
(2.9)
A 		22
C 35.6
(1.3)
A 		32.5
(-3)
A 		36.8
(3)
A 		36.3
(2.3)
A 		4
avr 23.8
(-1.6) 		17.7
(-3) 		21.6
(-2.1) 		44.2
(3) 		27

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 45
1 2 3 4 5 6 range
A 2.6
(-3)
A 		18.8
(0.1)
A 		25.5
(1.4)
A 		7.1
(-2.1)
A 		25.3
(1.4)
A 		33.8
(3)
A 		31
B 15.4
(-0.4)
A 		32.7
(3)
A 		10.7
(-1.3)
A 		2.2
(-3)
A 		13.3
(-0.8)
A 		3.3
(-2.8)
A 		31
C 13.1
(-1.8)
A 		16.8
(-1.3)
A 		36.8
(1.5)
A 		47.5
(3)
A 		5.6
(-2.9)
A 		4.9
(-3)
A 		43
avr 10.4
(-3) 		22.8
(2.4) 		24.3
(3) 		18.9
(0.7) 		14.7
(-1.1) 		14
(-1.4) 		14
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 2.4
(-1.7)
A 		2.9
(-1.4)
A 		0.4
(-3)
A 		9.9
(3)
A 		10
B 9.3
(3)
A 		1.8
(-3)
A 		6.1
(0.4)
A 		6.2
(0.5)
A 		8
C 11.8
(2.1)
A 		9.3
(-0.1)
A 		12.8
(3)
A 		6.1
(-3)
A 		7
avr 7.8
(3) 		4.7
(-3) 		6.4
(0.3) 		7.4
(2.2) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 0.5
(-3)
A 		6.7
(1.8)
A 		5.5
(0.9)
A 		1.8
(-2)
A 		7.6
(2.5)
A 		8.2
(3)
A 		8
B 5.4
(-0.2)
A 		10.9
(3)
A 		2.6
(-1.8)
A 		0.6
(-3)
A 		5.4
(-0.2)
A 		1.2
(-2.7)
A 		10
C 4.9
(-0.5)
A 		5.1
(-0.4)
A 		9.4
(2.9)
A 		9.6
(3)
A 		1.8
(-2.9)
A 		1.6
(-3)
A 		8
avr 3.6
(-3) 		7.6
(3) 		5.8
(0.3) 		4
(-2.4) 		4.9
(-1.1) 		3.7
(-2.9) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189547_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15194
Sequence Type Exemplar sequence
Representative Public ID F37B4.13 NCBI
Target Description F37B4.13 /REP_DB=WormBase Gene ID /WP=CE24955 /GEN=srh-240 /GB=AAK18948.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071376(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071376 NCBI Caenorhabditis elegans Serpentine Receptor, class H family member (srh-240) (srh-240) mRNA, complete cds. 10/11 None
F37B4.13 ENSEMBL cdna:known chromosome:CEL140:V:2865026:2867111:1 gene:F37B4.13 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:2865025-2867111(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srh family
Gene Symbol srh-240
Ensembl F37B4.13
Entrez Gene 191889 Entrez gene
SwissProt Q9BKN9 EMBL-EBI
WormBase CE35968 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4930 G-protein coupled receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAK18948 Serpentine receptor, class h protein 240 [Caenorhabditis elegans] ref|NP_503777.3| Serpentine Receptor, class H family member (srh-240) [Caenorhabditis elegans] 0.0
blast F88978 protein F37B4.4 [imported] - Caenorhabditis elegans 1.0E-114
blast CAE58085 Hypothetical protein CBG01167 [Caenorhabditis briggsae] 1.0E-113
Protein Domains
Database ID Description E-Value
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503777.3 7 18-40,60-82,92-114,134-152,188-210,244-266,270-292
F37B4.13 7 18-40,60-82,92-114,134-152,188-210,244-266,270-292
Sequence
Target Sequence 
>C. ELEGANS:189547_AT
gtacctttgatgtttgtagctccattatttgatatacctgatcaggaggttgctcgatat
gaagtattgaaatccataccttgcctacctgaacttacactggaaaatcggaaaatgttc
gttttgacgttagattttacaattcctttttcctgtatcttttgtgctatgttaattgtg
gtagcatcgtttctggtcttcatcttccttaccttttcgaacatttggttcggggatgcg
tgggcggcttctaggcaaacaatggtgcttcagagagctttcacgaaaggcgtcacagtt
cttcagactctctacgaattttttatactcttcatcccggtcgttacttgccttggcaca
atatttttctggtatcacaatcaggtcatcaacaatattgcgcttctagttgtatcacta
aacggaatcggatccactatcataatgttattcgctcataagccatatcgaacttatact
ctttctattttctgcttcctttgtccaaaagt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTACCTTTGATGTTTGTAGCTCCAT 62 459 445 Antisense
CTTGCCTACCTGAACTTACACTGGA 453 219 524 Antisense
CTTTTTCCTGTATCTTTTGTGCTAT 371 223 590 Antisense
ATTGTGGTAGCATCGTTTCTGGTCT 166 5 619 Antisense
TCTTCCTTACCTTTTCGAACATTTG 625 615 647 Antisense
TGGTGCTTCAGAGAGCTTTCACGAA 17 553 707 Antisense
ACAGTTCTTCAGACTCTCTACGAAT 21 109 739 Antisense
GAATTTTTTATACTCTTCATCCCGG 471 325 760 Antisense
GGTCGTTACTTGCCTTGGCACAATA 582 501 783 Antisense
ATATTGCGCTTCTAGTTGTATCACT 178 19 839 Antisense
TTTTCTGCTTCCTTTGTCCAAAAGT 275 677 932 Antisense
Sequence Source Affymetrix Proprietary Database