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[189543_at] 7TM chemoreceptor, str family

Description Y73C8C.11 /REP_DB=WormBase Gene ID /WP=CE25587 /GEN=str-69 /GB=AAK68598.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster 6grp_total > 68      4grp_total > 17      6grp_cgc > 39      6grp_cgc_sub > Cu      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 50
1 2 3 4 range
A 7.2
(-3)
A 		42.5
(3)
A 		34.8
(1.7)
A 		33.5
(1.5)
A 		35
B 10.5
(-2.8)
A 		20.2
(-0.8)
A 		9.4
(-3)
A 		38.5
(3)
A 		29
C 13.1
(-2)
A 		15.7
(-1.7)
A 		4.8
(-3)
A 		54.3
(3)
A 		50
avr 10.3
(-3) 		26.1
(-0) 		16.3
(-1.9) 		42.1
(3) 		32

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 65
1 2 3 4 5 6 range
A 53.3
(1.4)
A 		5.6
(-3)
A 		9.2
(-2.7)
A 		38.3
(-0)
A 		42.4
(0.4)
A 		71
(3)
A 		65
B 20
(-2.2)
A 		17.1
(-3)
A 		33.9
(1.6)
A 		32.9
(1.3)
A 		35.5
(2)
A 		39.1
(3)
M 		22
C 23.3
(-0.1)
A 		20.5
(-0.6)
A 		40.6
(3)
A 		19.7
(-0.7)
A 		6.7
(-3)
A 		19.7
(-0.7)
A 		34
avr 32.2
(0.7) 		14.4
(-3) 		27.9
(-0.2) 		30.3
(0.3) 		28.2
(-0.1) 		43.3
(3) 		29
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 2.6
(-3)
A 		9.2
(3)
A 		9.1
(2.9)
A 		4.9
(-0.9)
A 		7
B 3.3
(-1.9)
A 		5
(-0.2)
A 		2.2
(-3)
A 		8.2
(3)
A 		6
C 4.3
(-0.9)
A 		4.5
(-0.8)
A 		1.7
(-3)
A 		9.2
(3)
A 		8
avr 3.4
(-3) 		6.2
(1.2) 		4.3
(-1.7) 		7.4
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 9.8
(0.1)
A 		2
(-3)
A 		2
(-3)
A 		9.7
(0)
A 		12.8
(1.2)
A 		17.3
(3)
A 		15
B 6.9
(-2.2)
A 		5.7
(-3)
A 		8.2
(-1.3)
A 		8.7
(-1)
A 		14.4
(2.9)
A 		14.6
(3)
M 		9
C 8.6
(1.7)
A 		6.3
(0)
A 		10.3
(3)
A 		4
(-1.7)
A 		2.2
(-3)
A 		6.6
(0.3)
A 		8
avr 8.4
(-0.3) 		4.7
(-3) 		6.8
(-1.4) 		7.5
(-0.9) 		9.8
(0.8) 		12.8
(3) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189543_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15710
Sequence Type Exemplar sequence
Representative Public ID Y73C8C.11 NCBI
Target Description Y73C8C.11 /REP_DB=WormBase Gene ID /WP=CE25587 /GEN=str-69 /GB=AAK68598.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071449(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071449 NCBI Caenorhabditis elegans Seven TM Receptor family member (str-69) (str-69) mRNA, complete cds. 11/11 None
GENEFINDER00000003111 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:3099839:3105737:-1 10/11 None
Y73C8C.11 ENSEMBL cdna:known chromosome:CEL140:V:3104617:3105737:-1 gene:Y73C8C.11 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:3104616-3105737(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, str family
Gene Symbol str-69
Ensembl Y73C8C.11
Entrez Gene 191986 Entrez gene
SwissProt Q965G3 EMBL-EBI
WormBase CE25587 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast T33792 hypothetical protein Y73C8C.5 - Caenorhabditis elegans 0.0
blast AAK68599 Seven tm receptor protein 66 [Caenorhabditis elegans] ref|NP_503849.1| Seven TM Receptor family member (str-66) [Caenorhabditis elegans] 1.0E-153
blast AAK68598 Seven tm receptor protein 69 [Caenorhabditis elegans] ref|NP_503850.1| Seven TM Receptor family member (str-69) [Caenorhabditis elegans] 1.0E-150
blast AAC69342 Hypothetical protein Y73C8C.4 [Caenorhabditis elegans] ref|NP_503848.2| Y73C8C.4 [Caenorhabditis elegans] 1.0E-148
blast T33792 hypothetical protein Y73C8C.5 - Caenorhabditis elegans 1.0E-130
blast F88987 protein C50H11.16 [imported] - Caenorhabditis elegans 2.0E-83
Protein Domains
Database ID Description E-Value
Pfam IPR004920 EMBL-EBI Protein of unknown function DUF263 5.6E-51
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503850.1 7 13-35,47-64,90-112,133-155,197-219,246-268,283-305
Y73C8C.11 7 13-35,47-64,90-112,133-155,197-219,246-268,283-305
GENEFINDER00000003111 12 13-35,47-64,90-112,133-155,197-219,246-268,283-305,318-337,365-387,408-430,472-494,518-540
Sequence
Target Sequence 
>C. ELEGANS:189543_AT
gtgccaggggcattctacactatttccatgaattttctgtgtgcagccgatgaatattcc
gatagttacgtacaagctacaataagtaaaaattacgggctcgaggtgtcaaagttgcca
agatactctatgatcgcattttctgccgatggatccttacggtggaatacagttatatat
ttgatcataggaatttcttcaataagttttcactattttatcattatagtgtgctgctac
aaaatgcacatctccatgaaaatagaactggcaaagttttccgtcaaaaaccagacgctt
caccgtcaatttttcaaagcgctcatcgtacaaataatcggtccaactatttttctgatc
attccgaccatcccaattttcttcgcaccgttgctctcgcctattctcaaaattgatgtc
gactggcagacgggcaacttatttgcccttgttggctttaatgctccatttgacagtatt
gcatttatgttaattgtttcagaatataaaacaatcgttaaacagaaattgtgcggcgtt
tcggtggtt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGCCAGGGGCATTCTACACTATTT 14 477 430 Antisense
GTGTGCAGCCGATGAATATTCCGAT 453 487 468 Antisense
TACGGGCTCGAGGTGTCAAAGTTGC 409 647 523 Antisense
GATACTCTATGATCGCATTTTCTGC 517 423 551 Antisense
TTTTCTGCCGATGGATCCTTACGGT 302 677 568 Antisense
AAACCAGACGCTTCACCGTCAATTT 249 125 717 Antisense
CTATTTTTCTGATCATTCCGACCAT 525 223 776 Antisense
GCTCTCGCCTATTCTCAAAATTGAT 529 299 822 Antisense
GATGTCGACTGGCAGACGGGCAACT 482 407 844 Antisense
GCAACTTATTTGCCCTTGTTGGCTT 447 317 863 Antisense
GAAATTGTGCGGCGTTTCGGTGGTT 312 359 954 Antisense
Sequence Source Affymetrix Proprietary Database