[Home] | [Total List]

[189541_at] homeobox protein

Description ZC204.2 /REP_DB=WormBase Gene ID /WP=CE15086 /TR=P91547 /GB=AAB37911.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=homeobox protein
Cluster 6grp_highest_10_10 > 68      6grp_high1_10_10 > 96      4grp_high_8_8 > 14      6grp_highest_nonorm > 91      6grp_total > 76      4grp_total > 09      6grp_highest_sub > In      6grp_high1_sub > In      6grp_total_sub > Increase      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 588
1 2 3 4 range
A 125.8
(-3)
P 		243
(-1.6)
P 		171.1
(-2.5)
M 		624.7
(3)
P 		499
B 106.7
(-3)
P 		201.1
(-2)
P 		194.9
(-2.1)
P 		695
(3)
P 		588
C 126.4
(-3)
P 		178.6
(-2.3)
P 		163.7
(-2.5)
P 		583
(3)
P 		457
avr 119.6
(-3) 		207.6
(-2) 		176.6
(-2.3) 		634.2
(3) 		515

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 157
1 2 3 4 5 6 range
A 107.8
(-3)
P 		135.6
(-1.9)
P 		156
(-1.1)
P 		204.7
(0.9)
P 		223.9
(1.6)
P 		258.7
(3)
P 		151
B 130.2
(-2.6)
P 		120.3
(-3)
P 		217
(1.4)
P 		168
(-0.8)
P 		144.3
(-1.9)
P 		252.8
(3)
P 		133
C 193.8
(0.2)
P 		112.8
(-3)
P 		187.2
(-0.1)
P 		170.6
(-0.7)
P 		188.9
(-0)
P 		265.1
(3)
P 		152
avr 143.9
(-2.1) 		122.9
(-3) 		186.7
(-0.2) 		181.1
(-0.4) 		185.7
(-0.2) 		258.9
(3) 		136
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 114
1 2 3 4 range
A 45.8
(-2.9)
P 		52.8
(-2)
P 		44.7
(-3)
M 		91.4
(3)
P 		47
B 34
(-3)
P 		49.7
(-2.2)
P 		45.2
(-2.4)
P 		148.1
(3)
P 		114
C 41.8
(-3)
P 		51.4
(-2)
P 		57.1
(-1.4)
P 		98.3
(3)
P 		57
avr 40.5
(-3) 		51.3
(-2.1) 		49
(-2.3) 		112.6
(3) 		72

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 74
1 2 3 4 5 6 range
A 19.9
(-3)
P 		48.2
(0.6)
P 		34
(-1.2)
P 		51.9
(1)
P 		67.6
(3)
P 		63
(2.4)
P 		48
B 45.3
(-2.4)
P 		40
(-3)
P 		52.7
(-1.6)
P 		44.5
(-2.5)
P 		58.6
(-0.9)
P 		94.3
(3)
P 		54
C 71.8
(1.1)
P 		34.4
(-3)
P 		47.7
(-1.5)
P 		34.3
(-3)
P 		61.1
(-0)
P 		88.7
(3)
P 		54
avr 45.7
(-2.3) 		40.9
(-3) 		44.8
(-2.4) 		43.6
(-2.6) 		62.4
(0.1) 		82
(3) 		41
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189541_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5876
Sequence Type Exemplar sequence
Representative Public ID ZC204.2 NCBI
Target Description ZC204.2 /REP_DB=WormBase Gene ID /WP=CE15086 /TR=P91547 /GB=AAB37911.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=homeobox protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061631(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061631 NCBI Caenorhabditis elegans ZC204.2 (ZC204.2) mRNA, complete cds. 11/11 None
SNAP00000031416 ENSEMBL cdna:SNAP chromosome:CEL140:II:1660122:1665709:1 11/11 None
GENEFINDER00000031424 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:1663689:1665709:1 11/11 None
ZC204.2 ENSEMBL cdna:known chromosome:CEL140:II:1663800:1665766:1 gene:ZC204.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:1663829-1665708(+) 100.0 100.0
Public Domain and Genome References
Gene Title homeobox protein
Ensembl ZC204.2
Entrez Gene 173537 Entrez gene
SwissProt P91547 EMBL-EBI
WormBase CE15086 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6355 regulation of transcription, DNA-dependent inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3677 DNA binding inferred from electronic annotation QuickGO AmiGO
3700 transcription factor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB37911 Hypothetical protein ZC204.2 [Caenorhabditis elegans] ref|NP_494032.1| ZC204.2 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
scop a.4.1.Homeodomain All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; Homeodomain 0.0149999996647239
scop a.4.1.Homeodomain All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; Homeodomain 0.0140000004321337
Sequence
Target Sequence 
>C. ELEGANS:189541_AT
caagcgtctatctcaagacctcgtcgacaagctccaggagctgttccagatcaacgagat
gcccggtcgagagatcagtgaacagtgggcgcagcagctggggatctcactaaaaactct
aaacaactggatgcaaaagaagcgaagtcaaaagttacacccagaacaggctaagctcaa
gagtcaacgctggcaagaaacgcgacgactgaggagagccgggctgaatcaggaaaaagt
agaaaaagccctaccgtacttggaggcagctttcaagagatgccaatttgccacccaaca
gactatggcagagctgaagttgaatacgtcgttgcagaaaagccagatcagactatggtt
cagcagacggaggaaggcaccggatgcgacacatgtgccggcgatcgagtctgacagtga
tgatctggtcgagctacgagctcttttcaacgctaccgaagaggacgatgactcggatat
tgagatcctacgagacacgaggcaggagcaggaggagtaccggaatcgaccggaagtccg
tgcgatgatcgaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAAGCGTCTATCTCAAGACCTCGTC 611 185 693 Antisense
GCTCCAGGAGCTGTTCCAGATCAAC 216 299 723 Antisense
GAGATGCCCGGTCGAGAGATCAGTG 41 397 748 Antisense
TCAGTGAACAGTGGGCGCAGCAGCT 531 623 767 Antisense
GTTACACCCAGAACAGGCTAAGCTC 305 445 846 Antisense
AACGCGACGACTGAGGAGAGCCGGG 488 141 891 Antisense
CTACCGTACTTGGAGGCAGCTTTCA 471 225 943 Antisense
TCAAGAGATGCCAATTTGCCACCCA 83 633 965 Antisense
GCCGGCGATCGAGTCTGACAGTGAT 534 283 1089 Antisense
GATGATCTGGTCGAGCTACGAGCTC 312 411 1111 Antisense
ACCGGAAGTCCGTGCGATGATCGAA 122 87 1221 Antisense
Sequence Source Affymetrix Proprietary Database