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[189537_at] NAM7 like protein

Description C44H9.4 /REP_DB=WormBase Gene ID /WP=CE05420 /TR=Q18633 /GB=CAA99786.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=NAM7 like protein
Cluster 6grp_high1_10_10 > 37      6grp_total > 07      4grp_total > 13      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 90
1 2 3 4 range
A 38.6
(0.3)
A 		14.9
(-3)
A 		18.1
(-2.5)
A 		57.4
(3)
A 		43
B 47.6
(-0.2)
P 		27.8
(-1.5)
A 		5.3
(-3)
A 		95.1
(3)
A 		90
C 48.2
(-0.8)
M 		25.8
(-3)
A 		33.6
(-2.2)
A 		87.5
(3)
P 		62
avr 44.8
(-0.5) 		22.8
(-2.6) 		19
(-3) 		80
(3) 		61

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 42
1 2 3 4 5 6 range
A 74.7
(3)
P 		49.9
(-0.5)
P 		52.2
(-0.2)
P 		50.1
(-0.5)
P 		32.3
(-3)
A 		52.7
(-0.1)
A 		42
B 49.4
(-0.1)
P 		49.6
(-0.1)
P 		63.8
(3)
A 		45
(-1.1)
P 		36.2
(-3)
P 		49.7
(-0.1)
P 		28
C 72.3
(3)
P 		55.4
(0.3)
A 		61.7
(1.3)
P 		49.8
(-0.6)
A 		35
(-3)
A 		52.5
(-0.2)
P 		37
avr 65.5
(3) 		51.6
(0.3) 		59.2
(1.8) 		48.3
(-0.3) 		34.5
(-3) 		51.6
(0.3) 		31
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 14.1
(3)
A 		3.2
(-3)
A 		4.7
(-2.2)
A 		8.4
(-0.1)
A 		11
B 15.2
(1.4)
P 		6.9
(-1.2)
A 		1.2
(-3)
A 		20.3
(3)
A 		19
C 16
(3)
M 		7.4
(-3)
A 		11.7
(-0)
A 		14.7
(2.1)
P 		9
avr 15.1
(3) 		5.8
(-3) 		5.9
(-2.9) 		14.5
(2.6) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 13.8
(0)
P 		17.7
(3)
P 		11.4
(-1.8)
P 		12.7
(-0.8)
P 		9.8
(-3)
A 		12.8
(-0.7)
A 		8
B 17.2
(1.8)
P 		16.5
(1.2)
P 		15.5
(0.3)
A 		11.9
(-3)
P 		14.7
(-0.5)
P 		18.5
(3)
P 		7
C 26.8
(3)
P 		16.9
(-0.5)
A 		15.7
(-1)
P 		10
(-3)
A 		11.3
(-2.5)
A 		17.6
(-0.3)
P 		17
avr 19.3
(3) 		17
(1.2) 		14.2
(-0.9) 		11.5
(-3) 		11.9
(-2.7) 		16.3
(0.7) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189537_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13491
Sequence Type Exemplar sequence
Representative Public ID C44H9.4 NCBI
Target Description C44H9.4 /REP_DB=WormBase Gene ID /WP=CE05420 /TR=Q18633 /GB=CAA99786.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=NAM7 like protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073812(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073812 NCBI Caenorhabditis elegans C44H9.4 (C44H9.4) mRNA, complete cds. 9/11 None
SNAP00000031460 ENSEMBL cdna:SNAP chromosome:CEL140:V:12838297:12842119:1 9/11 None
GENEFINDER00000031465 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:12836273:12842247:1 9/11 None
C44H9.4 ENSEMBL cdna:known chromosome:CEL140:V:12838297:12842372:1 gene:C44H9.4 9/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:12838296-12842078(+) 100.0 100.0
Public Domain and Genome References
Gene Title NAM7 like protein
Ensembl C44H9.4
Entrez Gene 179760 Entrez gene
SwissProt Q18633 EMBL-EBI
WormBase CE35434 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA99786 Hypothetical protein C44H9.4 [Caenorhabditis elegans] ref|NP_506213.2| C44H9.4 [Caenorhabditis elegans] 0.0
blast CAE56882 Hypothetical protein CBG24721 [Caenorhabditis briggsae] 0.0
blast CAE56511 Hypothetical protein CBG24231 [Caenorhabditis briggsae] 0.0
Sequence
Target Sequence 
>C. ELEGANS:189537_AT
aagtcaaaggatatggtctctcagaatctgatattggtattatttcattctataaagccc
aaacatctttactcgcggatgcattaaagaaaactgatgtaaaatgtggaacaattgatg
catttcaaggaactgaacgagaagtgatgattgtttgctgcactaataagaatccatccc
tttttatgcaagaaggaactcgtgtcaacgtggcaatgtctagagctcgtcaagcgacta
ttatcattggaaatattgcaaaactgaagaaagcaaaacattgggatacaattgctcaga
gtgcacagatcaacaaatgctcaatggaagtttcaacatttggtggcagtgaacaaaaac
aaccacaaatggttcaggtatgttcgaatgtgagatattcaaataattttttaattttca
gattaaatgtacagcaaaaaaatcgaataaaattcaaaaaaatcaaaatgaaggaaaaca
tatctcaatttctcaggtttgttttttttttaacatttccttctataactat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGTCAAAGGATATGGTCTCTCAGA 618 157 2723 Antisense
AAAGCCCAAACATCTTTACTCGCGG 397 123 2776 Antisense
GCTGCACTAATAAGAATCCATCCCT 63 297 2879 Antisense
GAATCCATCCCTTTTTATGCAAGAA 101 331 2892 Antisense
GGAACTCGTGTCAACGTGGCAATGT 569 529 2917 Antisense
GTGGCAATGTCTAGAGCTCGTCAAG 116 491 2932 Antisense
GCTCGTCAAGCGACTATTATCATTG 592 299 2947 Antisense
AATTGCTCAGAGTGCACAGATCAAC 566 177 3012 Antisense
AAGTTTCAACATTTGGTGGCAGTGA 119 157 3050 Antisense
ACATATCTCAATTTCTCAGGTTTGT 568 105 3200 Antisense
TTTTAACATTTCCTTCTATAACTAT 200 675 3230 Antisense
Sequence Source Affymetrix Proprietary Database