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[189535_at] protein kinase

Description Y47G6A.13 /REP_DB=WormBase Gene ID /WP=CE22097 /TR=Q9N3T7 /GB=AAF60673.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation /DEF=protein kinase
Cluster 6grp_total > 79      4grp_total > 01      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 48
1 2 3 4 range
A 7.4
(-2.4)
A 		13.3
(-1.6)
A 		2.7
(-3)
A 		48.8
(3)
A 		46
B 25.3
(0.9)
A 		2.1
(-3)
A 		3.1
(-2.8)
A 		37.9
(3)
A 		36
C 1.3
(-3)
A 		3.4
(-2.6)
A 		30.1
(3)
A 		6.7
(-1.9)
A 		29
avr 11.3
(-1.8) 		6.3
(-3) 		12
(-1.6) 		31.1
(3) 		25

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 64
1 2 3 4 5 6 range
A 44.1
(1.1)
A 		13.9
(-3)
A 		21.9
(-1.9)
A 		15.1
(-2.8)
A 		25
(-1.5)
A 		58.6
(3)
P 		45
B 7.1
(-2.6)
A 		25.8
(-0.6)
A 		3.8
(-3)
A 		3.5
(-3)
A 		36.1
(0.5)
A 		58.7
(3)
P 		55
C 4
(-3)
A 		15.1
(-1.9)
A 		6.6
(-2.8)
A 		6
(-2.8)
A 		43.9
(0.8)
A 		67.4
(3)
P 		63
avr 18.4
(-1.9) 		18.3
(-1.9) 		10.8
(-2.7) 		8.2
(-3) 		35
(0) 		61.6
(3) 		53
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 2.7
(-1.1)
A 		2.9
(-0.9)
A 		0.7
(-3)
A 		7.1
(3)
A 		6
B 8.1
(3)
A 		0.5
(-3)
A 		0.7
(-2.8)
A 		8.1
(3)
A 		8
C 0.4
(-3)
A 		1
(-2.6)
A 		10.5
(3)
A 		1.1
(-2.6)
A 		10
avr 3.7
(0.4) 		1.5
(-3) 		4
(0.8) 		5.4
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 22
1 2 3 4 5 6 range
A 8.1
(-0.5)
A 		5
(-2.3)
A 		4.8
(-2.4)
A 		3.8
(-3)
A 		7.6
(-0.8)
A 		14.3
(3)
P 		11
B 2.5
(-2.5)
A 		8.6
(-0.8)
A 		0.9
(-3)
A 		0.9
(-3)
A 		14.6
(0.9)
A 		21.9
(3)
P 		21
C 1.5
(-2.9)
A 		4.6
(-2)
A 		1.7
(-2.9)
A 		1.2
(-3)
A 		14.2
(0.6)
A 		22.6
(3)
P 		21
avr 4
(-2.3) 		6.1
(-1.6) 		2.5
(-2.8) 		2
(-3) 		12.1
(0.4) 		19.6
(3) 		18
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189535_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.163
Sequence Type Exemplar sequence
Representative Public ID Y47G6A.13 NCBI
Target Description Y47G6A.13 /REP_DB=WormBase Gene ID /WP=CE22097 /TR=Q9N3T7 /GB=AAF60673.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation /DEF=protein kinase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058761(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058761 NCBI Caenorhabditis elegans Y47G6A.13 (Y47G6A.13) mRNA, complete cds. 11/11 None
SNAP00000033970 ENSEMBL cdna:SNAP chromosome:CEL140:I:3439438:3441029:-1 11/11 None
GENEFINDER00000034067 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:3439438:3442189:-1 11/11 None
Y47G6A.13 ENSEMBL cdna:known chromosome:CEL140:I:3439438:3442189:-1 gene:Y47G6A.13 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:3439437-3442189(-) 93.82 100.0
Public Domain and Genome References
Gene Title protein kinase
Ensembl Y47G6A.13
Entrez Gene 189993 Entrez gene
SwissProt Q9N3T7 EMBL-EBI
WormBase CE22097 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6468 protein amino acid phosphorylation inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4672 protein kinase activity inferred from electronic annotation QuickGO AmiGO
4674 protein serine/threonine kinase activity inferred from electronic annotation QuickGO AmiGO
5524 ATP binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_491162 Y47G6A.13 [Caenorhabditis elegans] gb|AAF60673.1| Hypothetical protein Y47G6A.13 [Caenorhabditis elegans] 0.0
blast CAE68976 Hypothetical protein CBG14958 [Caenorhabditis briggsae] 0.0
blast CAE68976 Hypothetical protein CBG14958 [Caenorhabditis briggsae] 1.0E-144
blast CAB03982 Hypothetical protein C53A5.4 [Caenorhabditis elegans] ref|NP_506600.1| C53A5.4 [Caenorhabditis elegans] 2.0E-57
Protein Domains
Database ID Description E-Value
Pfam IPR000719 EMBL-EBI Protein kinase 4.2E-17
Pfam IPR000719 EMBL-EBI Protein kinase 1.0E-5
Sequence
Target Sequence 
>C. ELEGANS:189535_AT
ccccgacgagctcaaatcaatcttcgagtacctgagaactctgagctacgcagatcgccc
gaactatgagaagatttataatctgctgatggcggctatcaccagactgaagatcaactt
tctggatccatatgaatgggaagacgacgagatggaaagaatggcaaaagctgagaaaga
ggaaaaagagaaggaagagaaggagaaaaaggaaaaggaaaataaggagaatgagttgtc
tgccgattcgatgaaaactgcgattccagcaaagtcagcgaaagccgagtcggaagttgc
tggagaggttgatgagcagaagaaggtgaaggataacagttccggtgaacagcagcagga
tacgttgaatgtggataagggcaacaagttgatcagtgcaaaagatatggctagcagtcg
ttcggaggttaacgaaaactcgcagtatgggactccggcgaaagcgggaaattctgttac
gggagattcaatcgacatggaaactgccattgaatgcgatcaaatggaatacaactcgaa
gaaggcgttgccaagagacgagcttcaattcgtcgtatatccggca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCCCGACGAGCTCAAATCAATCTTC 575 261 792 Antisense
GTACCTGAGAACTCTGAGCTACGCA 46 459 819 Antisense
CTACGCAGATCGCCCGAACTATGAG 40 227 837 Antisense
TCTGCTGATGGCGGCTATCACCAGA 598 609 873 Antisense
ATGAGTTGTCTGCCGATTCGATGAA 677 43 1022 Antisense
CTGCGATTCCAGCAAAGTCAGCGAA 592 235 1049 Antisense
GCCGAGTCGGAAGTTGCTGGAGAGG 242 285 1075 Antisense
ATATGGCTAGCAGTCGTTCGGAGGT 491 21 1196 Antisense
GCAGTATGGGACTCCGGCGAAAGCG 94 291 1233 Antisense
GCGTTGCCAAGAGACGAGCTTCAAT 582 287 1336 Antisense
GCTTCAATTCGTCGTATATCCGGCA 553 305 1353 Antisense
Sequence Source Affymetrix Proprietary Database