[Home] | [Total List]

[189534_at]

Description F55F3.2 /REP_DB=WormBase Gene ID /WP=CE18745 /TR=Q9XUY4 /GB=CAB04478.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=Carboxylesterases
Cluster 6grp_highest_10_10 > 15      6grp_high1_10_10 > 41      6grp_highest_nonorm > 42      6grp_total > 42      4grp_total > 61      6grp_highest_sub > 03      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1321
1 2 3 4 range
A 1085.7
(3)
P 		866
(1.7)
P 		1090.8
(3)
P 		59.5
(-3)
A 		1031
B 1159.8
(3)
P 		922.3
(1.7)
P 		1142.2
(2.9)
P 		63.3
(-3)
A 		1097
C 1380.7
(3)
P 		963.5
(1.1)
P 		739.5
(0)
P 		79.8
(-3)
A 		1301
avr 1208.7
(3) 		917.3
(1.5) 		990.8
(1.9) 		67.5
(-3) 		1141

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1120
1 2 3 4 5 6 range
A 919.9
(0.5)
P 		1064.5
(1.4)
P 		1295.4
(3)
P 		927.4
(0.5)
P 		774.6
(-0.5)
P 		407.5
(-3)
P 		888
B 747.8
(-0.6)
P 		834.6
(-0.1)
P 		1355.9
(3)
P 		1021.4
(1)
P 		657.7
(-1.2)
P 		347.9
(-3)
P 		1008
C 703.9
(-1.5)
P 		812
(-0.9)
P 		1468.1
(3)
P 		988
(0.2)
P 		602.2
(-2.1)
P 		451.9
(-3)
P 		1016
avr 790.5
(-0.6) 		903.7
(0.1) 		1373.1
(3) 		978.9
(0.6) 		678.2
(-1.3) 		402.4
(-3) 		971
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 448
1 2 3 4 range
A 395.3
(3)
P 		188
(-0.2)
P 		285.1
(1.3)
P 		8.7
(-3)
A 		387
B 369.9
(3)
P 		227.8
(0.6)
P 		264.7
(1.2)
P 		13.5
(-3)
A 		356
C 457.1
(3)
P 		277
(0.6)
P 		257.7
(0.3)
P 		13.5
(-3)
A 		444
avr 407.4
(3) 		230.9
(0.3) 		269.2
(0.9) 		11.9
(-3) 		396

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 279
1 2 3 4 5 6 range
A 169.6
(-1.5)
P 		378.6
(3)
P 		282.1
(0.9)
P 		235.2
(-0.1)
P 		233.7
(-0.1)
P 		99.2
(-3)
P 		279
B 260.2
(0.9)
P 		277.8
(1.5)
P 		329.3
(3)
P 		270.5
(1.2)
P 		267.2
(1.1)
P 		129.7
(-3)
P 		200
C 260.9
(-0)
P 		247.8
(-0.4)
P 		373.7
(3)
P 		198.7
(-1.7)
P 		194.8
(-1.8)
P 		151.3
(-3)
P 		222
avr 230.2
(0.1) 		301.4
(2.2) 		328.4
(3) 		234.8
(0.2) 		231.9
(0.1) 		126.7
(-3) 		202
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189534_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17801
Sequence Type Exemplar sequence
Representative Public ID F55F3.2 NCBI
Target Description F55F3.2 /REP_DB=WormBase Gene ID /WP=CE18745 /TR=Q9XUY4 /GB=CAB04478.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=Carboxylesterases
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171793(11), NM_171976(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171793 NCBI Caenorhabditis elegans F55F3.2b (Carboxylesterases) mRNA, complete cds. 11/11 None
NM_171976 NCBI Caenorhabditis elegans F55F3.2a (Carboxylesterases) mRNA, complete cds. 11/11 None
SNAP00000018555 ENSEMBL cdna:SNAP chromosome:CEL140:X:13760231:13763867:1 11/11 None
GENEFINDER00000018559 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:13760231:13763867:1 11/11 None
F55F3.2b ENSEMBL cdna:known chromosome:CEL140:X:13760211:13763903:1 gene:F55F3.2 11/11 None
F55F3.2a ENSEMBL cdna:known chromosome:CEL140:X:13760231:13763902:1 gene:F55F3.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:13760230-13763867(+) 100.0 100.0
Public Domain and Genome References
Ensembl F55F3.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAD44141 Hypothetical protein F55F3.2b [Caenorhabditis elegans] ref|NP_741921.1| F55F3.2b [Caenorhabditis elegans] 0.0
blast CAB04478 Hypothetical protein F55F3.2a [Caenorhabditis elegans] ref|NP_741922.1| F55F3.2a [Caenorhabditis elegans] 0.0
blast CAE63087 Hypothetical protein CBG07376 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002018 EMBL-EBI Carboxylesterase, type B 9.8E-96
Pfam IPR002018 EMBL-EBI Carboxylesterase, type B 2.6E-95
Pfam IPR002018 EMBL-EBI Carboxylesterase, type B 7.3E-94
Sequence
Target Sequence 
>C. ELEGANS:189534_AT
taatagctcgcacaacactgctcatcaaatgcgtgatgatttgtcaggaagctatgagat
gacctattgggataacaaacagtctgtgctcgttgccgccgacaacaagtacattaacaa
tcaaggatggacagacgataatcatagagagtgggaggcaaggagaattcagttatggag
tgaaatggtgttcattgggccaactttgagggatgccgcatacttccaatatatgaagaa
taatgtatatctgtactctctcgattggttgagtccaccagctcttccactggtcaccga
tccacttttccgtggctgcgagcacacatgggagctccaatacatattctcaacctcctg
taatggattcacgtgtactgcacaagatgagattttgcgtaactactttaccactacttg
gctcaatttcattattggaggaaatcctactcctgccggaagccccttgccgttcaaatg
gcttgccatggacagtaccaacagattcttgtctttctcgccaaatccaaaaatgcagcc
acactatcatccagattctatgttctgggtgtgcactg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAATAGCTCGCACAACACTGCTCAT 279 635 1056 Antisense
GAGGGATGCCGCATACTTCCAATAT 15 403 1263 Antisense
ATGTATATCTGTACTCTCTCGATTG 631 47 1298 Antisense
TCGATTGGTTGAGTCCACCAGCTCT 381 603 1316 Antisense
CATATTCTCAACCTCCTGTAATGGA 179 215 1398 Antisense
ACTACTTTACCACTACTTGGCTCAA 308 101 1457 Antisense
GCCCCTTGCCGTTCAAATGGCTTGC 460 285 1517 Antisense
ATGGCTTGCCATGGACAGTACCAAC 97 53 1533 Antisense
ACCAACAGATTCTTGTCTTTCTCGC 376 83 1552 Antisense
CAGCCACACTATCATCCAGATTCTA 131 203 1591 Antisense
GATTCTATGTTCTGGGTGTGCACTG 220 431 1609 Antisense
Sequence Source Affymetrix Proprietary Database