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[189531_s_at] sulphate permease

Description ZK287.2 /REP_DB=WormBase Gene ID /WP=CE06611 /TR=Q23454 /GB=CAA94798.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=sulphate permease
Cluster 6grp_highest_10_10 > 52      6grp_high1_10_10 > 29      4grp_highest_8_8 > 49      4grp_high_8_8 > 41      6grp_highest_nonorm > 72      6grp_total > 16      4grp_total > 54      6grp_highest_sub > 01_02      6grp_cgc > 03      6grp_high1_sub > Cu      6grp_total_sub > Decrease      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 368
1 2 3 4 range
A 612.1
(3)
P 		399.7
(-0.5)
P 		359.5
(-1.1)
P 		244.4
(-3)
P 		368
B 511.1
(3)
P 		366.2
(-0.4)
P 		323.8
(-1.5)
P 		258.6
(-3)
P 		253
C 504.7
(3)
P 		393.6
(0.1)
P 		377.4
(-0.4)
P 		278.5
(-3)
P 		226
avr 542.6
(3) 		386.5
(-0.3) 		353.6
(-1) 		260.5
(-3) 		282

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 189
1 2 3 4 5 6 range
A 455.3
(3)
P 		423.3
(1.7)
P 		349.3
(-1.3)
P 		308.6
(-3)
P 		411
(1.2)
P 		348.3
(-1.4)
P 		147
B 497.7
(3)
P 		424.4
(0.4)
P 		327.1
(-3)
P 		362.8
(-1.7)
P 		409.6
(-0.1)
P 		369.5
(-1.5)
P 		171
C 346.8
(-2.2)
P 		427.1
(3)
P 		381.3
(0)
P 		409.5
(1.9)
P 		334.7
(-3)
P 		386.8
(0.4)
P 		92
avr 433.3
(3) 		424.9
(2.4) 		352.6
(-3) 		360.3
(-2.4) 		385.1
(-0.6) 		368.2
(-1.8) 		81
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 187
1 2 3 4 range
A 222.9
(3)
P 		86.8
(-1.4)
P 		94
(-1.1)
P 		35.8
(-3)
P 		187
B 163
(3)
P 		90.5
(-1)
P 		75
(-1.9)
P 		55.1
(-3)
P 		108
C 167.1
(3)
P 		113.2
(0.3)
P 		131.5
(1.2)
P 		47
(-3)
P 		120
avr 184.3
(3) 		96.8
(-0.8) 		100.2
(-0.6) 		46
(-3) 		138

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 97
1 2 3 4 5 6 range
A 83.9
(-2.4)
P 		150.5
(3)
P 		76.1
(-3)
P 		78.3
(-2.8)
P 		124
(0.9)
P 		84.8
(-2.3)
P 		74
B 173.2
(3)
P 		141.3
(1)
P 		79.4
(-3)
P 		96.1
(-1.9)
P 		166.4
(2.6)
P 		137.8
(0.7)
P 		94
C 128.5
(2.8)
P 		130.3
(3)
P 		97.1
(-1.2)
P 		82.3
(-3)
P 		108.3
(0.2)
P 		129.5
(2.9)
P 		48
avr 128.5
(1.7) 		140.7
(3) 		84.2
(-3) 		85.6
(-2.9) 		132.9
(2.2) 		117.4
(0.5) 		57
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 189531_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11473
Sequence Type Exemplar sequence
Representative Public ID ZK287.2 NCBI
Target Description ZK287.2 /REP_DB=WormBase Gene ID /WP=CE06611 /TR=Q23454 /GB=CAA94798.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=sulphate permease
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073092(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073092 NCBI Caenorhabditis elegans SULfate Permease family member (sulp-8) (sulp-8) mRNA, complete cds. 11/11 None
SNAP00000034521 ENSEMBL cdna:SNAP chromosome:CEL140:V:9672912:9675671:-1 11/11 None
GENEFINDER00000034534 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:9672912:9678105:-1 11/11 None
ZK287.2 ENSEMBL cdna:known chromosome:CEL140:V:9672639:9675509:-1 gene:ZK287.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:9672911-9675509(-) 100.0 100.0
Public Domain and Genome References
Gene Title sulphate permease
Gene Symbol sulp-8
Ensembl ZK287.2
Entrez Gene 179357 Entrez gene
SwissProt Q23454 EMBL-EBI
WormBase CE06611 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATGENOME1:16611_AT sulfate transporter family protein at
ATH1-121501:245855_AT sulfate transporter family protein at
CANINE_2:CFAAFFX.6747.1.S1_S_AT similar to Chloride anion exchanger (DRA protein) (Down-regulated in adenoma) (Solute carrier family 26, member 3) cfa
CHICKEN:GGAAFFX.4984.1.S1_AT similar to down-regulated in adenoma DRA gga
CHICKEN:GGAAFFX.4984.2.S1_S_AT similar to down-regulated in adenoma DRA gga
HG-U95AV2:928_AT solute carrier family 26, member 3 hs
HC-G110:928_AT solute carrier family 26, member 3 hs
HG-U133_PLUS_2:206143_AT solute carrier family 26, member 3 hs
HG-U133A:206143_AT solute carrier family 26, member 3 hs
HG-FOCUS:206143_AT solute carrier family 26, member 3 hs
HG-U133A_2:206143_AT solute carrier family 26, member 3 hs
HUGENEFL:L02785_AT solute carrier family 26, member 3 hs
U133_X3P:G4557534_3P_AT solute carrier family 26, member 3 hs
U133_X3P:HS2.306752.1.S1_3P_AT Solute carrier family 26, member 3 hs
HG-U133_PLUS_2:1563692_AT Solute carrier family 26, member 3 hs
HG-U133_PLUS_2:215657_AT Solute carrier family 26, member 3 hs
HG-U133A_2:215657_AT Solute carrier family 26, member 3 hs
HG-U133A:215657_AT Solute carrier family 26, member 3 hs
MOE430A:1427547_A_AT solute carrier family 26, member 3 mm
MOUSE430_2:1427547_A_AT solute carrier family 26, member 3 mm
MOUSE430A_2:1427547_A_AT solute carrier family 26, member 3 mm
MOUSE430_2:1421445_AT solute carrier family 26, member 3 mm
MOE430A:1421445_AT solute carrier family 26, member 3 mm
MOUSE430A_2:1421445_AT solute carrier family 26, member 3 mm
MG-U74CV2:165702_AT solute carrier family 26, member 3 mm
MOE430B:1429467_S_AT solute carrier family 26, member 3 mm
MOUSE430_2:1429467_S_AT solute carrier family 26, member 3 mm
MOE430B:1453151_AT solute carrier family 26, member 3 mm
MOUSE430_2:1453151_AT solute carrier family 26, member 3 mm
RAE230A:1388051_AT solute carrier family 26, member 3 rn
RAT230_2:1388051_AT solute carrier family 26, member 3 rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
8272 sulfate transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
8271 sulfate porter activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA94798 Hypothetical protein ZK287.2 [Caenorhabditis elegans] ref|NP_505493.1| SULfate Permease family member (sulp-8) [Caenorhabditis elegans] gb|AAX34429.1| anion transporter SULP-8b [Caenorhabditis elegans] gb|AAX34433.1| anion transporter SULP-8a [Caenorhabditis elegans] 0.0
blast CAE72225 Hypothetical protein CBG19337 [Caenorhabditis briggsae] 0.0
blast ABA18183 putative sulfate transporter prestin [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001902 EMBL-EBI Sulphate transporter 1.0E-126
Pfam IPR002645 EMBL-EBI Sulfate transporter/antisigma-factor antagonist STAS 2.3E-29
Pfam IPR001902 EMBL-EBI Sulphate transporter 1.0E-126
Pfam IPR002645 EMBL-EBI Sulfate transporter/antisigma-factor antagonist STAS 2.3E-29
Pfam IPR001902 EMBL-EBI Sulphate transporter 1.0E-126
Pfam IPR002645 EMBL-EBI Sulfate transporter/antisigma-factor antagonist STAS 2.3E-29
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505493.1 10 51-73,88-107,144-166,218-240,261-278,312-331,344-366,381-400,407-424,439-461
ZK287.2 10 51-73,88-107,144-166,218-240,261-278,312-331,344-366,381-400,407-424,439-461
SNAP00000034521 10 63-85,100-119,156-178,230-252,273-290,324-343,356-378,393-412,419-436,451-473
GENEFINDER00000034534 10 153-175,182-201,226-248,301-323,338-360,384-406,426-448,460-482,486-503,523-545
Sequence
Target Sequence 
>C. ELEGANS:189531_S_AT
caatctggctagtcgcatgcctttcaacaatattcactgatgttaccactggtttggtaa
tttctcttgccttctctctctacactctcgttctccgtcaacaatggccatcgttctcta
cagttttgcatgacgaaactccacgccaaaacgtccctgaaaatgtcaaaattgtaaaat
tcgccggatctcttcattttgcaaatgtgacagcgttccaagatgatatgggagaagcta
tcggaaaacttccagaagaagatccattaattgatgaacgaactattatccttgatgcta
gttcagttgcatttatagatataatgggagtggatgctttgcgagatgttttcaaagatg
ctttgaaacttggtgtacacgttttttattgcggactcccagaagatgtactctctgttc
tatccaatgatgagaactttctttcagttgtaccaccttctacattctttccttcaattg
a

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAATCTGGCTAGTCGCATGCCTTTC 261 181 1328 Antisense
ATTCACTGATGTTACCACTGGTTTG 642 11 1359 Antisense
GGTTTGGTAATTTCTCTTGCCTTCT 426 505 1378 Antisense
TTTGCATGACGAAACTCCACGCCAA 147 669 1452 Antisense
TCCACGCCAAAACGTCCCTGAAAAT 691 585 1467 Antisense
TAAAATTCGCCGGATCTCTTCATTT 71 641 1502 Antisense
TGTACACGTTTTTTATTGCGGACTC 161 559 1701 Antisense
GCGGACTCCCAGAAGATGTACTCTC 196 293 1718 Antisense
TGTACTCTCTGTTCTATCCAATGAT 495 559 1734 Antisense
GAACTTTCTTTCAGTTGTACCACCT 514 347 1761 Antisense
CTTCTACATTCTTTCCTTCAATTGA 260 221 1784 Antisense
Sequence Source Affymetrix Proprietary Database