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[189529_at] MUTT protein like

Description T26E3.2 /REP_DB=WormBase Gene ID /WP=CE14186 /TR=O45830 /GB=CAB04835.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=MUTT protein like
Cluster 6grp_highest_10_10 > 24      6grp_high1_10_10 > 32      4grp_highest_8_8 > 08      4grp_high_8_8 > 52      6grp_highest_nonorm > 52      6grp_total > 32      4grp_total > 51      6grp_cgc > 61      6grp_high1_sub > 02_03      6grp_cgc_sub > De      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 588
1 2 3 4 range
A 707.5
(0.4)
P 		965.8
(3)
P 		707.6
(0.4)
P 		377.9
(-3)
P 		588
B 720.1
(2)
P 		780.8
(2.9)
P 		788.4
(3)
P 		392.9
(-3)
P 		396
C 705.9
(1.3)
P 		821.2
(3)
P 		724.5
(1.6)
P 		413.6
(-3)
P 		408
avr 711.2
(1.1) 		855.9
(3) 		740.2
(1.5) 		394.8
(-3) 		461

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 657
1 2 3 4 5 6 range
A 674.1
(3)
P 		595.7
(1.8)
P 		623.3
(2.2)
P 		515.7
(0.6)
P 		577.7
(1.6)
P 		275.1
(-3)
P 		399
B 611.2
(1.7)
P 		628.4
(1.9)
P 		708.5
(3)
P 		536.6
(0.7)
P 		451.8
(-0.4)
P 		253.4
(-3)
P 		455
C 486.1
(-1.2)
P 		871.1
(2.6)
P 		910.7
(3)
P 		458
(-1.5)
P 		442.6
(-1.6)
P 		303.1
(-3)
P 		608
avr 590.5
(1) 		698.4
(2.4) 		747.5
(3) 		503.4
(-0.1) 		490.7
(-0.3) 		277.2
(-3) 		470
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 202
1 2 3 4 range
A 257.6
(3)
P 		209.6
(1.6)
P 		185
(0.8)
P 		55.3
(-3)
P 		202
B 229.6
(3)
P 		192.8
(1.5)
P 		182.7
(1.1)
P 		83.7
(-3)
P 		146
C 233.7
(2.4)
P 		236.1
(2.5)
P 		252.5
(3)
P 		69.7
(-3)
P 		183
avr 240.3
(3) 		212.8
(2) 		206.7
(1.8) 		69.6
(-3) 		171

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 199
1 2 3 4 5 6 range
A 124.3
(-0.6)
P 		211.9
(3)
P 		135.7
(-0.2)
P 		130.8
(-0.4)
P 		174.3
(1.4)
P 		67
(-3)
P 		145
B 212.7
(3)
P 		209.2
(2.8)
P 		172
(0.9)
P 		142.1
(-0.6)
P 		183.6
(1.5)
P 		94.5
(-3)
P 		118
C 180.2
(0)
P 		265.8
(3)
P 		231.8
(1.8)
P 		92.1
(-3)
P 		143.2
(-1.2)
P 		101.5
(-2.7)
P 		174
avr 172.4
(0.6) 		229
(3) 		179.8
(0.9) 		121.7
(-1.6) 		167
(0.4) 		87.7
(-3) 		141
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189529_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2258
Sequence Type Exemplar sequence
Representative Public ID T26E3.2 NCBI
Target Description T26E3.2 /REP_DB=WormBase Gene ID /WP=CE14186 /TR=O45830 /GB=CAB04835.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=MUTT protein like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060808(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060808 NCBI Caenorhabditis elegans NuDiX family member (ndx-1) (ndx-1) mRNA, complete cds. 11/11 None
SNAP00000034749 ENSEMBL cdna:SNAP chromosome:CEL140:I:12687332:12689539:1 9/11 None
GENEFINDER00000034752 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:12687332:12689900:1 11/11 None
T26E3.2 ENSEMBL cdna:known chromosome:CEL140:I:12687332:12689900:1 gene:T26E3.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:12687262-12689831(+) 100.0 100.0
Public Domain and Genome References
Gene Title MUTT protein like
Gene Symbol ndx-1
Ensembl T26E3.2
Entrez Gene 173138 Entrez gene
SwissProt O45830 EMBL-EBI
WormBase CE14186 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04835 Hypothetical protein T26E3.2 [Caenorhabditis elegans] ref|NP_493209.1| NuDiX family member (ndx-1) [Caenorhabditis elegans] sp|O45830|NDX1_CAEEL Putative nudix hydrolase 0.0
blast CAE64103 Hypothetical protein CBG08712 [Caenorhabditis briggsae] 1.0E-169
blast XP_586518 PREDICTED: similar to nudix (nucleoside diphosphate linked moiety X)-type motif 18 [Bos taurus] 1.0E-29
Protein Domains
Database ID Description E-Value
Pfam IPR000086 EMBL-EBI NUDIX hydrolase 6.0E-32
Sequence
Target Sequence 
>C. ELEGANS:189529_AT
acagaacccgatcaggaatccctagccgcagagtggtataacatcaaggatctcaaagcc
aacaaggttcagttaagaggccgagatttcatccgactagtcgacgaggccgtcacatac
cgaacacacggccccgtcgattctattccacgtgtaatgccgttaaatcaaaacgttgct
ggattatttttggagtttatgattgtcaagcactctagggatgggctccgaaccgaggtg
ctcgtgcacaagtcgatcaaggacgagacgtacctgctggaagaggaacagccattccca
acggtggaatttgggttcgagtacttctttgcgatggttgtatccaagtgttataggcat
ttgctcgaagaaggtgccaatgtagtatttacaccgtctcacgtgacgcggataaaatgc
cacccaaaaccaatggaatccctggcgcacggagtctcaataagggtttactgcgagcac
aagcaatccgcttcaaaagccatcattcggagtccgcggtatcactggatatccgtcgaa
tcaccggagacacgacagcgatttcacatgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACAGAACCCGATCAGGAATCCCTAG 507 107 502 Antisense
GAATCCCTAGCCGCAGAGTGGTATA 371 327 517 Antisense
GCCGAGATTTCATCCGACTAGTCGA 42 283 581 Antisense
TCGACGAGGCCGTCACATACCGAAC 376 601 602 Antisense
CCCGTCGATTCTATTCCACGTGTAA 296 259 634 Antisense
CAAGCACTCTAGGGATGGGCTCCGA 399 185 708 Antisense
GGTGCTCGTGCACAAGTCGATCAAG 97 501 738 Antisense
TACACCGTCTCACGTGACGCGGATA 21 643 891 Antisense
CAAAAGCCATCATTCGGAGTCCGCG 253 191 995 Antisense
TCCGCGGTATCACTGGATATCCGTC 93 595 1014 Antisense
GAGACACGACAGCGATTTCACATGG 153 393 1048 Antisense
Sequence Source Affymetrix Proprietary Database