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[189528_s_at] aminotransferase

Description T09B4.8 /REP_DB=WormBase Gene ID /WP=CE13471 /TR=O02158 /GB=AAB53010.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation /DEF=aminotransferase
Cluster 6grp_highest_10_10 > 32      6grp_high1_10_10 > 12      4grp_high_8_8 > 61      6grp_highest_nonorm > 41      6grp_total > 24      4grp_total > 59      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2541
1 2 3 4 range
A 1071.4
(-0.5)
P 		2561.8
(3)
P 		1994.4
(1.7)
P 		21.1
(-3)
A 		2541
B 1382.8
(0.8)
P 		1777.8
(1.9)
P 		2178.9
(3)
P 		48
(-3)
A 		2131
C 1297.1
(0.2)
P 		1784.2
(1.5)
P 		2338.1
(3)
P 		91.8
(-3)
P 		2246
avr 1250.4
(0.4) 		2041.3
(2.6) 		2170.5
(3) 		53.6
(-3) 		2117

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 837
1 2 3 4 5 6 range
A 1070.1
(3)
P 		977.1
(2.3)
P 		936.3
(2)
P 		615.5
(-0.5)
P 		355.4
(-2.5)
P 		283.7
(-3)
P 		786
B 1094.3
(2.8)
P 		1120.3
(3)
P 		1040
(2.4)
P 		602.8
(-0.7)
P 		330.4
(-2.7)
P 		289.4
(-3)
P 		831
C 1048.4
(3)
P 		1046.2
(3)
P 		701.4
(0.2)
P 		526.8
(-1.3)
P 		361.9
(-2.6)
P 		317.2
(-3)
P 		731
avr 1070.9
(3) 		1047.9
(2.8) 		892.6
(1.6) 		581.7
(-0.8) 		349.2
(-2.6) 		296.8
(-3) 		774
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 812
1 2 3 4 range
A 390.1
(1.2)
P 		556.1
(3)
P 		521.4
(2.6)
P 		3.1
(-3)
A 		553
B 441
(2.2)
P 		439.1
(2.2)
P 		504.9
(3)
P 		10.2
(-3)
A 		495
C 429.4
(0.1)
P 		513
(0.7)
P 		814.9
(3)
P 		15.5
(-3)
P 		799
avr 420.2
(1.1) 		502.7
(1.9) 		613.7
(3) 		9.6
(-3) 		604

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 320
1 2 3 4 5 6 range
A 197.3
(-0.2)
P 		347.5
(3)
P 		203.9
(-0.1)
P 		156.1
(-1.1)
P 		107.2
(-2.2)
P 		69.1
(-3)
P 		278
B 380.8
(3)
P 		372.9
(2.8)
P 		252.5
(0.2)
P 		159.7
(-1.9)
P 		134.2
(-2.4)
P 		107.9
(-3)
P 		273
C 388.6
(3)
P 		319.2
(1.5)
P 		178.5
(-1.5)
P 		105.9
(-3)
P 		117.1
(-2.8)
P 		106.2
(-3)
P 		283
avr 322.2
(2.4) 		346.5
(3) 		211.6
(-0.2) 		140.6
(-1.9) 		119.5
(-2.4) 		94.4
(-3) 		252
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 189528_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2316
Sequence Type Exemplar sequence
Representative Public ID T09B4.8 NCBI
Target Description T09B4.8 /REP_DB=WormBase Gene ID /WP=CE13471 /TR=O02158 /GB=AAB53010.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation /DEF=aminotransferase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059376(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059376 NCBI Caenorhabditis elegans T09B4.8 (aminotransferase) mRNA, complete cds. 11/11 A 
SNAP00000036037 ENSEMBL cdna:SNAP chromosome:CEL140:I:6172972:6174666:-1 10/11 None
GENEFINDER00000036047 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:6172972:6174666:-1 10/11 None
T09B4.8 ENSEMBL cdna:known chromosome:CEL140:I:6172873:6174676:-1 gene:T09B4.8 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:6172739-6174595(-) 100.0 100.0
Public Domain and Genome References
Gene Title aminotransferase
Ensembl T09B4.8
Entrez Gene 172301 Entrez gene
SwissProt O02158 EMBL-EBI
WormBase CE33176 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATGENOME1:17594_S_AT alanine--glyoxylate aminotransferase, putative / beta-alanine-pyruvate aminotransferase, putative / AGT, putative at
ATGENOME1:17593_R_AT alanine--glyoxylate aminotransferase, putative / beta-alanine-pyruvate aminotransferase, putative / AGT, putative at
ATGENOME1:19858_S_AT alanine--glyoxylate aminotransferase, putative / beta-alanine-pyruvate aminotransferase, putative / AGT, putative at
ATH1-121501:252855_AT alanine--glyoxylate aminotransferase, putative / beta-alanine-pyruvate aminotransferase, putative / AGT, putative at
CANINE:1588425_AT similar to alanine-glyoxylate aminotransferase 2 precursor cfa
CANINE_2:CFA.15562.1.A1_AT similar to alanine-glyoxylate aminotransferase 2 precursor cfa
CANINE_2:CFAAFFX.28696.1.S1_S_AT similar to alanine-glyoxylate aminotransferase 2 precursor cfa
DROSOPHILA_2:1628611_AT dm
DROSGENOME1:154290_AT dm
CHICKEN:GGAAFFX.2137.1.S1_S_AT similar to alanine-glyoxylate aminotransferase 2 precursor; beta-alanine-pyruvate aminotransferase; beta-ALAAT II gga
HU35KSUBB:RC_AA010205_AT alanine-glyoxylate aminotransferase 2 hs
HU35KSUBB:RC_R10287_AT alanine-glyoxylate aminotransferase 2 hs
HU35KSUBB:RC_N65959_AT alanine-glyoxylate aminotransferase 2 hs
U133_X3P:HS.193228.0.S1_3P_AT alanine-glyoxylate aminotransferase 2 hs
HG-U133_PLUS_2:229229_AT alanine-glyoxylate aminotransferase 2 hs
HG-U133B:229229_AT alanine-glyoxylate aminotransferase 2 hs
HG-U95B:43594_AT alanine-glyoxylate aminotransferase 2 hs
HG-U95B:58981_AT alanine-glyoxylate aminotransferase 2 hs
HG-U95C:60480_AT alanine-glyoxylate aminotransferase 2 hs
HG-U95B:53401_R_AT Alanine-glyoxylate aminotransferase 2 hs
MG-U74BV2:114160_AT alanine-glyoxylate aminotransferase 2 mm
MOE430B:1435838_AT alanine-glyoxylate aminotransferase 2 mm
MOUSE430_2:1435838_AT alanine-glyoxylate aminotransferase 2 mm
MG-U74BV2:113525_AT alanine-glyoxylate aminotransferase 2 mm
RG-U34A:AB002584_AT alanine-glyoxylate aminotransferase 2 rn
RAE230A:1368659_AT alanine-glyoxylate aminotransferase 2 rn
RAT230_2:1368659_AT alanine-glyoxylate aminotransferase 2 rn
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
8483 transaminase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB53010 Hypothetical protein T09B4.8 [Caenorhabditis elegans] ref|NP_491777.3| T09B4.8 [Caenorhabditis elegans] 0.0
blast CAE67402 Hypothetical protein CBG12888 [Caenorhabditis briggsae] 0.0
blast AAL13781 LD24726p [Drosophila melanogaster] 1.0E-139
Protein Domains
Database ID Description E-Value
Pfam IPR005814 EMBL-EBI Aminotransferase class-III 1.3E-41
Pfam IPR005814 EMBL-EBI Aminotransferase class-III 4.7E-73
Sequence
Target Sequence 
>C. ELEGANS:189528_S_AT
gaaaagggttaatgatcggagtggaacttatcgatgagcaagggaaaccacttgccgcag
ccaaaacagcagctatcttcgaagacactaagaaccaaggcctactgatcggaaaaggag
gtatccatggaaacgttctccgtatcaaaccaccaatgtgtattactaaaaaggatgtcg
attttgctgcgccgtcatttcttcatttcgatattaccaaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAAAGGGTTAATGATCGGAGTGGA 357 285 1193 Antisense
CGGAGTGGAACTTATCGATGAGCAA 544 243 1209 Antisense
GCAAGGGAAACCACTTGCCGCAGCC 2 321 1230 Antisense
CACTTGCCGCAGCCAAAACAGCAGC 218 197 1241 Antisense
AAACAGCAGCTATCTTCGAAGACAC 326 127 1256 Antisense
GAAGACACTAAGAACCAAGGCCTAC 242 339 1273 Antisense
GAACCAAGGCCTACTGATCGGAAAA 320 345 1284 Antisense
GAGGTATCCATGGAAACGTTCTCCG 236 403 1310 Antisense
TATCCATGGAAACGTTCTCCGTATC 646 655 1314 Antisense
GTATCAAACCACCAATGTGTATTAC 171 451 1334 Antisense
TTTCTTCATTTCGATATTACCAAAT 130 673 1390 Antisense
Sequence Source Affymetrix Proprietary Database