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[189525_s_at] carboxylesterase

Description F13H6.3 /REP_DB=WormBase Gene ID /WP=CE09375 /TR=O16351 /GB=AAB65887.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=carboxylesterase
Cluster 6grp_highest_10_10 > 24      6grp_high1_10_10 > 30      4grp_highest_8_8 > 26      4grp_high_8_8 > 57      6grp_highest_nonorm > 41      6grp_total > 42      4grp_total > 62      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 541
1 2 3 4 range
A 746.4
(2.8)
P 		550.1
(-0.9)
P 		754.3
(3)
P 		441.2
(-3)
P 		313
B 826.3
(3)
P 		682.6
(0.6)
P 		800.7
(2.6)
P 		473.1
(-3)
P 		353
C 915.9
(2.1)
P 		615.5
(-1.8)
P 		982.1
(3)
P 		528.1
(-3)
P 		454
avr 829.5
(2.7) 		616.1
(-0.8) 		845.7
(3) 		480.8
(-3) 		365

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 833
1 2 3 4 5 6 range
A 699.3
(0.8)
P 		880
(3)
P 		748.6
(1.4)
P 		760.6
(1.6)
P 		382.7
(-3)
P 		447.5
(-2.2)
P 		497
B 690.5
(-1.5)
P 		756.5
(-0.9)
P 		1216
(3)
P 		550.6
(-2.7)
P 		524.9
(-2.9)
P 		511.8
(-3)
P 		704
C 848.5
(1.1)
P 		680.4
(-0.6)
P 		1046.1
(3)
P 		689.8
(-0.5)
P 		430.4
(-3)
P 		529.4
(-2)
P 		616
avr 746.1
(0.2) 		772.3
(0.5) 		1003.6
(3) 		667
(-0.6) 		446
(-3) 		496.2
(-2.5) 		558
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 278
1 2 3 4 range
A 271.8
(3)
P 		119.4
(-1.4)
P 		197.2
(0.8)
P 		64.6
(-3)
P 		207
B 263.5
(3)
P 		168.6
(-0.5)
P 		185.5
(0.1)
P 		100.8
(-3)
P 		163
C 303.2
(2.1)
P 		176.9
(-0.9)
P 		342.3
(3)
P 		89
(-3)
P 		253
avr 279.5
(3) 		155
(-0.8) 		241.7
(1.8) 		84.8
(-3) 		195

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 206
1 2 3 4 5 6 range
A 128.9
(-2.4)
P 		313
(3)
P 		163
(-1.4)
P 		192.9
(-0.5)
P 		115.5
(-2.8)
P 		109
(-3)
P 		204
B 240.3
(0.8)
P 		251.8
(1.3)
P 		295.3
(3)
P 		145.8
(-3)
P 		213.2
(-0.3)
P 		190.9
(-1.2)
P 		150
C 314.5
(3)
P 		207.6
(-0.6)
P 		266.3
(1.4)
P 		138.7
(-3)
P 		139.3
(-3)
P 		177.2
(-1.7)
P 		176
avr 227.9
(1.3) 		257.5
(3) 		241.5
(2.1) 		159.1
(-2.8) 		156
(-3) 		159
(-2.8) 		102
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 189525_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12090
Sequence Type Exemplar sequence
Representative Public ID F13H6.3 NCBI
Target Description F13H6.3 /REP_DB=WormBase Gene ID /WP=CE09375 /TR=O16351 /GB=AAB65887.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=carboxylesterase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072220(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072220 NCBI Caenorhabditis elegans F13H6.3 (carboxylesterase) mRNA, complete cds. 11/11 None
SNAP00000034391 ENSEMBL cdna:SNAP chromosome:CEL140:V:6366107:6367712:-1 11/11 None
GENEFINDER00000034398 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:6366107:6368262:-1 11/11 None
F13H6.3 ENSEMBL cdna:known chromosome:CEL140:V:6366019:6368265:-1 gene:F13H6.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:6366106-6368262(-) 100.0 100.0
Public Domain and Genome References
Gene Title carboxylesterase
Ensembl F13H6.3
Entrez Gene 179020 Entrez gene
SwissProt Q07085 EMBL-EBI
WormBase CE09375 Wormbase
Functional Annotations
Ortholog
ID Title Organism
MOUSE430A_2:1427137_AT carboxylesterase 5 mm
MOE430A:1427137_AT carboxylesterase 5 mm
MOUSE430_2:1427137_AT carboxylesterase 5 mm
MU19KSUBB:TC34751_AT Carboxylesterase 5, mRNA (cDNA clone IMAGE:5102191) mm
RG-U34A:D50580_AT carboxylesterase 5 rn
Protein Similarities
Method ID Description E-Value
blast AAB65887 Hypothetical protein F13H6.3 [Caenorhabditis elegans] ref|NP_504621.1| F13H6.3 [Caenorhabditis elegans] 0.0
blast CAA46899 esterase [Caenorhabditis elegans] sp|Q07085|EST2_CAEEL Esterase CM06B1 0.0
blast CAE71869 Hypothetical protein CBG18921 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002018 EMBL-EBI Carboxylesterase, type B 1.0E-126
Pfam IPR002018 EMBL-EBI Carboxylesterase, type B 1.0E-126
Pfam IPR002018 EMBL-EBI Carboxylesterase, type B 7.5E-34
Pfam IPR002018 EMBL-EBI Carboxylesterase, type B 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:189525_S_AT
tgtcgggttgacacttatgcctcaaggaatttatggaaaagatgtggttagcaatccgga
tgaaattcagaagattttctatgaaaaatacgtcgaaggagttgacaaatcagatgagtt
ggcgatgagaaagaaactatgtgaagctctcggagatgaatttttcaacgtaggagtgat
tcaggcagccaaaaatgctgccaagcatggaaatgaggtgtacttctacactttcgaata
cgtgaatccagatagttttggaatgtgggatggaatgatgccgttcaaggctgctgttca
ttgcaccgagctcagatatcttctcggtgaaggagtttacagcaagttcgaaccaacaga
ggaagatcggaaagttatggagactacgactacattattttcaaattttgccaaatatgg
aaatccaaatggaaaaggagccaccgccgagatatgggagaaatacagcttaaaccgtcc
agag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGTCGGGTTGACACTTATGCCTCAA 686 553 1050 Antisense
GAAACTATGTGAAGCTCTCGGAGAT 214 357 1182 Antisense
AACGTAGGAGTGATTCAGGCAGCCA 652 143 1216 Antisense
TGAGGTGTACTTCTACACTTTCGAA 53 557 1263 Antisense
GATGCCGTTCAAGGCTGCTGTTCAT 241 415 1326 Antisense
GTTCATTGCACCGAGCTCAGATATC 194 445 1345 Antisense
GAGCTCAGATATCTTCTCGGTGAAG 692 387 1357 Antisense
GAGTTTACAGCAAGTTCGAACCAAC 185 395 1382 Antisense
GGAGACTACGACTACATTATTTTCA 315 519 1428 Antisense
GAGCCACCGCCGAGATATGGGAGAA 29 385 1487 Antisense
GAAATACAGCTTAAACCGTCCAGAG 497 361 1509 Antisense
Sequence Source Affymetrix Proprietary Database