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[189524_at] carboxylesterase

Description B0238.2 /REP_DB=WormBase Gene ID /WP=CE07692 /CHR=5 /FEA=Sanger Annotation /DEF=carboxylesterase (ST.LOUIS) TR:O16495 protein_id:AAB65992.1
Cluster 6grp_total > 78      4grp_total > 43      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 43
1 2 3 4 range
A 24.1
(-1.6)
P 		51.2
(3)
A 		15.8
(-3)
A 		16.4
(-2.9)
A 		35
B 25.1
(0.9)
A 		20.1
(-1.3)
A 		29.9
(3)
A 		16.2
(-3)
A 		14
C 18.2
(0.7)
A 		19.6
(1.2)
A 		7.8
(-3)
A 		24.6
(3)
A 		17
avr 22.5
(-0.7) 		30.3
(3) 		17.8
(-3) 		19.1
(-2.4) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 85
1 2 3 4 5 6 range
A 49.1
(-1.4)
M 		27.7
(-3)
A 		74.8
(0.6)
P 		34.8
(-2.5)
A 		72.8
(0.4)
P 		106.5
(3)
P 		79
B 38
(-1.2)
P 		38.5
(-1.2)
P 		31.5
(-1.9)
A 		21.2
(-3)
A 		23.3
(-2.8)
A 		77.7
(3)
P 		57
C 21.1
(-3)
A 		21.2
(-3)
A 		25.1
(-2.7)
A 		32.4
(-2)
A 		55.5
(-0.1)
P 		91.3
(3)
P 		70
avr 36.1
(-2.3) 		29.1
(-3) 		43.8
(-1.6) 		29.5
(-3) 		50.5
(-1) 		91.8
(3) 		63
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 8.8
(1.4)
P 		11.1
(3)
A 		4.1
(-1.8)
A 		2.4
(-3)
A 		9
B 8
(3)
A 		5
(-1)
A 		6.9
(1.5)
A 		3.5
(-3)
A 		5
C 6
(3)
A 		5.6
(2.3)
A 		2.7
(-3)
A 		4.1
(-0.5)
A 		3
avr 7.6
(3) 		7.2
(2.4) 		4.6
(-1.2) 		3.3
(-3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 25
1 2 3 4 5 6 range
A 9.1
(-2.9)
M 		9.9
(-2.6)
A 		16.3
(-0.4)
P 		8.8
(-3)
A 		22
(1.6)
P 		25.9
(3)
P 		17
B 13.2
(-1.1)
P 		12.8
(-1.2)
P 		7.7
(-2.5)
A 		5.6
(-3)
A 		9.5
(-2)
A 		29
(3)
P 		23
C 7.8
(-2.7)
A 		6.5
(-3)
A 		6.4
(-3)
A 		6.5
(-3)
A 		17.9
(-0.1)
P 		30.6
(3)
P 		24
avr 10
(-2.2) 		9.7
(-2.2) 		10.1
(-2.1) 		7
(-3) 		16.5
(-0.3) 		28.5
(3) 		22
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189524_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11408
Sequence Type Exemplar sequence
Representative Public ID B0238.2 NCBI
Target Description B0238.2 /REP_DB=WormBase Gene ID /WP=CE07692 /CHR=5 /FEA=Sanger Annotation /DEF=carboxylesterase (ST.LOUIS) TR:O16495 protein_id:AAB65992.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072000
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000038878 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:5243435:5247833:-1 None
SNAP00000038868 ENSEMBL cdna:SNAP chromosome:CEL140:V:5243555:5249374:-1 None
B0238.13 ENSEMBL cdna:known chromosome:CEL140:V:5243541:5247833:-1 gene:B0238.13 A 
NM_072000 NCBI Caenorhabditis elegans B0238.13 (carboxylesterase) mRNA, complete cds. A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:5245652-5247833(-) 100.0 100.0
Public Domain and Genome References
Gene Title carboxylesterase
Ensembl B0238.13
Entrez Gene 178913 Entrez gene
SwissProt O16496 EMBL-EBI
WormBase CE29530 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB65992 Hypothetical protein B0238.13 [Caenorhabditis elegans] ref|NP_504401.1| B0238.13 [Caenorhabditis elegans] 0.0
blast AAK68262 Hypothetical protein C52A10.2 [Caenorhabditis elegans] ref|NP_504398.1| C52A10.2 [Caenorhabditis elegans] 0.0
blast AAB65983 Hypothetical protein B0238.1 [Caenorhabditis elegans] ref|NP_504400.1| B0238.1 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002018 EMBL-EBI Carboxylesterase, type B 1.0E-126
Pfam IPR002018 EMBL-EBI Carboxylesterase, type B 1.0E-126
Pfam IPR002018 EMBL-EBI Carboxylesterase, type B 1.0E-126
Pfam IPR002018 EMBL-EBI Carboxylesterase, type B 1.0E-126
Pfam IPR002651 EMBL-EBI Protein of unknown function DUF32 2.5E-28
Pfam IPR002018 EMBL-EBI Carboxylesterase, type B 4.6E-122
Pfam IPR002018 EMBL-EBI Carboxylesterase, type B 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
SNAP00000038868 3 11-30,57-79,96-118
Sequence
Target Sequence 
>C. ELEGANS:189524_AT
aagtctactgcaatggtaccaatctcaagattccgaaaaattccttgatgttgccaattt
taatagaccagcttccggattcatgtccttcgttccaaactttgacggagatttctttcc
gaaaccattcgacgagttgagaaaagaagctccaaaattcgatgcaattgtttcagttac
agaatatgaaggactaggctttctatcactctttcctaatcaagaaacacccgaacaaat
tttagctgcagctttcggaaaagatattttagttggtgactactatttcaatacaggggc
attggctactgctaagtctttaactaaacatggtagcaatgtatatctcacttctttcaa
ctactacaatcctgaaaaccaaactcctaccgccgaaaatctaccatttaaagcagcatc
tcatggctctgatctgagatatatacttggagatgacccaggaaagtttttggatgaaga
actcaaaattatggatatgatgtgcacgtttctat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGTCTACTGCAATGGTACCAATCT 224 157 816 Antisense
ATAGACCAGCTTCCGGATTCATGTC 221 23 878 Antisense
TCATGTCCTTCGTTCCAAACTTTGA 482 619 896 Antisense
GGAGATTTCTTTCCGAAACCATTCG 326 517 922 Antisense
GAAGGACTAGGCTTTCTATCACTCT 133 335 1003 Antisense
TTTCTATCACTCTTTCCTAATCAAG 605 671 1015 Antisense
GGGGCATTGGCTACTGCTAAGTCTT 194 499 1111 Antisense
TATATCTCACTTCTTTCAACTACTA 133 661 1157 Antisense
TACAATCCTGAAAACCAAACTCCTA 250 641 1180 Antisense
AAAGCAGCATCTCATGGCTCTGATC 281 123 1225 Antisense
ATGGATATGATGTGCACGTTTCTAT 588 51 1306 Antisense
Sequence Source Affymetrix Proprietary Database