[Home] | [Total List]

[189523_at] EGF-like domain

Description Y70G10A.2 /REP_DB=WormBase Gene ID /WP=CE20351 /TR=Q9XWC4 /GB=CAA21752.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=EGF-like domain
Cluster 6grp_total > 93      4grp_total > 06      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 61
1 2 3 4 range
A 40.9
(0.7)
A 		6.9
(-3)
A 		45.5
(1.2)
A 		62.7
(3)
A 		56
B 28.7
(0.2)
A 		16.7
(-1.2)
A 		1.4
(-3)
A 		53.2
(3)
A 		52
C 61
(3)
A 		6.7
(-3)
A 		38.6
(0.5)
A 		50.2
(1.8)
A 		54
avr 43.5
(1.4) 		10.1
(-3) 		28.5
(-0.6) 		55.4
(3) 		45

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 30
1 2 3 4 5 6 range
A 27.8
(2.4)
A 		20.4
(0.2)
A 		9.2
(-3)
A 		11.9
(-2.2)
A 		29.9
(3)
A 		16.7
(-0.8)
A 		21
B 4.2
(-2.5)
A 		6.8
(-1.9)
A 		26.8
(3)
A 		18.7
(1)
A 		3.8
(-2.6)
A 		2.2
(-3)
A 		25
C 7.4
(-3)
A 		8.4
(-2.8)
A 		8.4
(-2.8)
A 		9.6
(-2.5)
A 		31.8
(3)
A 		23.7
(1)
A 		24
avr 13.1
(-2.3) 		11.9
(-3) 		14.8
(-1.2) 		13.4
(-2.1) 		21.8
(3) 		14.2
(-1.6) 		10
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 14.9
(3)
A 		1.5
(-3)
A 		11.9
(1.7)
A 		9.2
(0.4)
A 		13
B 9.2
(1.9)
A 		4.1
(-0.9)
A 		0.3
(-3)
A 		11.3
(3)
A 		11
C 20.2
(3)
A 		1.9
(-3)
A 		13.5
(0.8)
A 		8.5
(-0.8)
A 		18
avr 14.8
(3) 		2.5
(-3) 		8.6
(-0) 		9.7
(0.5) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 5.1
(-0.3)
A 		7.2
(1.5)
A 		2
(-3)
A 		3
(-2.1)
A 		9
(3)
A 		4.1
(-1.2)
A 		7
B 1.5
(-2.3)
A 		2.3
(-1.4)
A 		6.5
(3)
A 		4.9
(1.3)
A 		1.5
(-2.3)
A 		0.8
(-3)
A 		6
C 2.7
(-2.4)
A 		2.6
(-2.5)
A 		2.1
(-2.9)
A 		1.9
(-3)
A 		10.3
(3)
A 		7.9
(1.3)
A 		8
avr 3.1
(-3) 		4
(-1.6) 		3.5
(-2.4) 		3.3
(-2.7) 		6.9
(3) 		4.3
(-1.1) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189523_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6839
Sequence Type Exemplar sequence
Representative Public ID Y70G10A.2 NCBI
Target Description Y70G10A.2 /REP_DB=WormBase Gene ID /WP=CE20351 /TR=Q9XWC4 /GB=CAA21752.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=EGF-like domain
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066865(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066865 NCBI Caenorhabditis elegans Y70G10A.2 (Y70G10A.2) mRNA, complete cds. 11/11 None
SNAP00000003437 ENSEMBL cdna:SNAP chromosome:CEL140:III:10228084:10233968:-1 11/11 None
GENEFINDER00000003443 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:10228084:10233968:-1 11/11 None
Y70G10A.2 ENSEMBL cdna:known chromosome:CEL140:III:10228084:10231129:-1 gene:Y70G10A.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:10228079-10231125(-) 100.0 100.0
Public Domain and Genome References
Gene Title EGF-like domain
Ensembl Y70G10A.2
Entrez Gene 190572 Entrez gene
SwissProt Q9XWC4 EMBL-EBI
WormBase CE20351 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA21752 Hypothetical protein Y70G10A.2 [Caenorhabditis elegans] ref|NP_499266.1| Y70G10A.2 [Caenorhabditis elegans] 0.0
blast CAE73760 Hypothetical protein CBG21295 [Caenorhabditis briggsae] 0.0
blast CAE65639 Hypothetical protein CBG10696 [Caenorhabditis briggsae] 0.0
blast CAE60136 Hypothetical protein CBG03682 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR006209 EMBL-EBI EGF-like domain 1.4E-5
Pfam IPR006209 EMBL-EBI EGF-like domain 1.4E-5
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_499266.1 6 211-228,276-298,338-357,377-396,437-454,464-486
Y70G10A.2 6 211-228,276-298,338-357,377-396,437-454,464-486
SNAP00000003437 5 1053-1075,1116-1135,1155-1174,1215-1232,1242-1264
GENEFINDER00000003443 5 1053-1075,1116-1135,1155-1174,1215-1232,1242-1264
Sequence
Target Sequence 
>C. ELEGANS:189523_AT
cccaatcgttttgctccagagtataatccggaaacaatgtggacatttgatgaagtgcgt
gaacattatgcaactccgaaagctgaaagagaagagaaatatgaaggattcttgtcgaga
aatcaacaattacttttgcatcatagatgggatattcgtttgaatgctcatttgacagaa
ggaaaaaagaatttgagtattgatgacgctcttgtgaaagtttttgttgaagaaatgcac
cgacttcaggaaaatcgaggaaccatcaaacagaaagaggcgatcaagaaatgctacgcg
gaatacatgaacacagtccctcacaaagatcctcgtgacattggaaaactgaacggacgt
cttgaacttgttacattggctgctgaagatccccttaacgggattaagcttgcgaaattc
ttcatagttccaaaatttcatattttcgagccagaacatgctagcaaattggaggaagat
ccggtgaaaaagactgccacacggcgactccacgaagaaatggaaaaggatatctacgaa
ttgacccgtgatgaggcgcatgctcaaaccaatttcat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCCAATCGTTTTGCTCCAGAGTATA 353 257 1522 Antisense
GTGCGTGAACATTATGCAACTCCGA 404 479 1576 Antisense
GTATTGATGACGCTCTTGTGAAAGT 50 453 1718 Antisense
GAATACATGAACACAGTCCCTCACA 472 327 1822 Antisense
GTCCCTCACAAAGATCCTCGTGACA 187 475 1837 Antisense
GAACGGACGTCTTGAACTTGTTACA 385 343 1872 Antisense
TACATTGGCTGCTGAAGATCCCCTT 285 643 1893 Antisense
AGCTTGCGAAATTCTTCATAGTTCC 87 79 1928 Antisense
GAAAAAGACTGCCACACGGCGACTC 619 355 2007 Antisense
GAATTGACCCGTGATGAGGCGCATG 314 323 2059 Antisense
AGGCGCATGCTCAAACCAATTTCAT 379 53 2075 Antisense
Sequence Source Affymetrix Proprietary Database