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[189521_s_at]

Description T06A4.3 /REP_DB=WormBase Gene ID /WP=CE18212 /TR=Q9TZH2 /GB=AAC67474.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation /DEF=carboxypeptidase
Cluster 6grp_total > 82      4grp_total > 49      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 317
1 2 3 4 range
A 5.6
(-3)
A 		322.3
(3)
P 		246.5
(1.6)
P 		5.3
(-3)
A 		317
B 9
(-3)
A 		261.8
(2.6)
P 		282.2
(3)
P 		21
(-2.7)
A 		273
C 24.5
(-3)
A 		252.8
(2.4)
P 		277.6
(3)
P 		45.2
(-2.5)
A 		253
avr 13
(-3) 		279
(3) 		268.8
(2.8) 		23.8
(-2.8) 		266

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 131
1 2 3 4 5 6 range
A 67
(-3)
A 		122
(2.3)
P 		105.6
(0.7)
A 		85.7
(-1.2)
A 		129.5
(3)
M 		102.8
(0.4)
A 		63
B 55.8
(-3)
A 		136.4
(2.9)
A 		126
(2.1)
P 		138
(3)
P 		137.9
(3)
P 		92.5
(-0.3)
A 		82
C 35.4
(-3)
A 		131.7
(1.4)
M 		60.8
(-1.8)
P 		110.6
(0.4)
P 		166.5
(3)
P 		91.2
(-0.4)
P 		131
avr 52.7
(-3) 		130
(2) 		97.5
(-0.1) 		111.4
(0.8) 		144.6
(3) 		95.5
(-0.2) 		92
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 96
1 2 3 4 range
A 2.1
(-2.9)
A 		70
(3)
P 		64.4
(2.5)
P 		0.8
(-3)
A 		69
B 2.9
(-3)
A 		64.6
(2.9)
P 		65.4
(3)
P 		4.5
(-2.8)
A 		63
C 8.1
(-3)
A 		72.7
(1.4)
P 		96.8
(3)
P 		7.6
(-3)
A 		89
avr 4.4
(-3) 		69.1
(2.5) 		75.5
(3) 		4.3
(-3) 		71

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 44
1 2 3 4 5 6 range
A 12.3
(-3)
A 		43.4
(3)
P 		23
(-0.9)
A 		21.7
(-1.2)
A 		39.1
(2.2)
M 		25
(-0.5)
A 		31
B 19.4
(-3)
A 		45.4
(1.3)
A 		30.6
(-1.2)
P 		36.5
(-0.2)
P 		56
(3)
P 		34.5
(-0.5)
A 		37
C 13.1
(-3)
A 		40.2
(1)
M 		15.5
(-2.6)
P 		22.2
(-1.7)
P 		53.9
(3)
P 		30.5
(-0.4)
P 		41
avr 14.9
(-3) 		43
(1.8) 		23
(-1.6) 		26.8
(-0.9) 		49.7
(3) 		30
(-0.4) 		35
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 189521_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3
Sequence Type Exemplar sequence
Representative Public ID T06A4.3 NCBI
Target Description T06A4.3 /REP_DB=WormBase Gene ID /WP=CE18212 /TR=Q9TZH2 /GB=AAC67474.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation /DEF=carboxypeptidase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026440(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001026440 NCBI Caenorhabditis elegans T06A4.3a (carboxypeptidase) mRNA, complete cds. 11/11 None
GENEFINDER00000004754 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:763677:770627:1 11/11 None
T06A4.3a ENSEMBL cdna:known chromosome:CEL140:I:763335:770706:1 gene:T06A4.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_001026441 3/11 Cross Hyb Matching Probes None
SNAP00000004750 3/11 Cross Hyb Matching Probes None
T06A4.3b 3/11 Cross Hyb Matching Probes None
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
171668 2 1 NM_001026440 189521_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:763676-770721(+) 100.0 100.0
Public Domain and Genome References
Ensembl T06A4.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_001021611 T06A4.3a [Caenorhabditis elegans] gb|AAT81187.1| Hypothetical protein T06A4.3a [Caenorhabditis elegans] 0.0
blast CAE61323 Hypothetical protein CBG05160 [Caenorhabditis briggsae] 0.0
blast NP_001021612 T06A4.3b [Caenorhabditis elegans] gb|AAT81188.1| Hypothetical protein T06A4.3b [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR003582 EMBL-EBI Metridin-like ShK toxin 1.2E-10
Pfam IPR000834 EMBL-EBI Peptidase M14, carboxypeptidase A 4.5E-39
Pfam IPR000834 EMBL-EBI Peptidase M14, carboxypeptidase A 5.5E-34
Pfam IPR003146 EMBL-EBI Peptidase M14A, carboxypeptidase activation peptide 2.1E-6
Pfam IPR003582 EMBL-EBI Metridin-like ShK toxin 1.2E-10
Pfam IPR000834 EMBL-EBI Peptidase M14, carboxypeptidase A 8.3E-35
Pfam IPR000834 EMBL-EBI Peptidase M14, carboxypeptidase A 5.5E-34
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001021611.1 1 7-29
T06A4.3a 1 7-29
GENEFINDER00000004754 1 7-29
Sequence
Target Sequence 
>C. ELEGANS:189521_S_AT
agttgtggcggaagctgtgctcgatcggatagttgccggcaagtcgacggctccaagagg
ccaccaattttttctcggtctccgatactttctcggctaccaactttttctcggccacca
actttttctcggccacagatttttttctcggccattaatttttgacggccaccgaaattt
tttcggtcaccgatatttttcacggccattgatatttttttcggtcaccgatactttctc
ggccacaaatattttctcggccaccgaaatttttcgcggtcatctatattttctcggcct
cagccatcgatatttttctggaccgtctagtttttttttggcggccaagccccaaaagct
cgcggattccgattcggcgacggcaccgaaggatcatgtttcgatgtccgacacgcgtgc
aaacgatgggttcaggaacgggaggagctgtgcaggacggtgccaattttcatgcgcgag
aactgtgcctactcttgcaatttctgttg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGTTGTGGCGGAAGCTGTGCTCGAT 341 65 1413 Antisense
GTGCTCGATCGGATAGTTGCCGGCA 210 479 1429 Antisense
TGCCGGCAAGTCGACGGCTCCAAGA 104 585 1446 Antisense
AAAAGCTCGCGGATTCCGATTCGGC 258 129 1766 Antisense
GCGACGGCACCGAAGGATCATGTTT 133 289 1789 Antisense
GATCATGTTTCGATGTCCGACACGC 370 421 1804 Antisense
GTCCGACACGCGTGCAAACGATGGG 322 475 1818 Antisense
GGAACGGGAGGAGCTGTGCAGGACG 407 527 1847 Antisense
CAGGACGGTGCCAATTTTCATGCGC 139 209 1865 Antisense
TCATGCGCGAGAACTGTGCCTACTC 163 621 1882 Antisense
GTGCCTACTCTTGCAATTTCTGTTG 77 479 1897 Antisense
Sequence Source Affymetrix Proprietary Database