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[189517_at] acid phosphatase

Description T13B5.3 /REP_DB=WormBase Gene ID /WP=CE13607 /TR=O17373 /GB=AAB71294.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=acid phosphatase
Cluster 6grp_highest_10_10 > 19      6grp_high1_10_10 > 81      4grp_highest_8_8 > 01      4grp_high_8_8 > 45      6grp_highest_nonorm > 63      6grp_total > 82      4grp_total > 50      6grp_highest_sub > 05      6grp_high1_sub > 04      6grp_rule_based > S5      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2447
1 2 3 4 range
A 615.7
(-2.4)
P 		2783.5
(3)
P 		2234.1
(1.6)
P 		378.7
(-3)
P 		2405
B 686.2
(-2.1)
P 		2587
(3)
P 		2041.1
(1.5)
P 		356
(-3)
P 		2231
C 699.1
(-2.1)
P 		2661.3
(3)
P 		2149.4
(1.7)
P 		336.7
(-3)
P 		2325
avr 667
(-2.2) 		2677.3
(3) 		2141.5
(1.6) 		357.1
(-3) 		2320

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 721
1 2 3 4 5 6 range
A 591.9
(-1.1)
P 		639.4
(-0.7)
P 		599.2
(-1.1)
P 		835.1
(1.1)
P 		1041.3
(3)
P 		388.7
(-3)
P 		653
B 528.5
(-2.2)
P 		711.6
(-0.6)
P 		553.6
(-2)
P 		969
(1.7)
P 		1110
(3)
P 		439.1
(-3)
P 		671
C 431.1
(-3)
P 		539.4
(-1.7)
P 		730.2
(0.7)
P 		888.9
(2.7)
P 		915.8
(3)
P 		449
(-2.8)
P 		485
avr 517.2
(-2.1) 		630.1
(-0.9) 		627.7
(-1) 		897.7
(1.7) 		1022.4
(3) 		425.6
(-3) 		597
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 710
1 2 3 4 range
A 224.2
(-1.2)
P 		604.2
(3)
P 		584
(2.8)
P 		55.4
(-3)
P 		549
B 218.8
(-1.5)
P 		638.9
(3)
P 		473
(1.2)
P 		75.9
(-3)
P 		563
C 231.4
(-1.5)
P 		765.1
(3)
P 		749.1
(2.9)
P 		56.8
(-3)
P 		708
avr 224.8
(-1.4) 		669.4
(3) 		602
(2.3) 		62.7
(-3) 		607

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 356
1 2 3 4 5 6 range
A 109.1
(-2.6)
P 		227.4
(0.6)
P 		130.5
(-2)
P 		211.8
(0.2)
P 		314.2
(3)
P 		94.6
(-3)
P 		220
B 183.9
(-2.1)
P 		236.9
(-1.1)
P 		134.4
(-3)
P 		256.6
(-0.7)
P 		451
(3)
P 		163.8
(-2.4)
P 		317
C 159.8
(-2.6)
P 		164.6
(-2.4)
P 		185.8
(-1.5)
P 		178.8
(-1.8)
P 		296.3
(3)
P 		150.3
(-3)
P 		146
avr 150.9
(-2.6) 		209.6
(-1) 		150.2
(-2.6) 		215.7
(-0.8) 		353.8
(3) 		136.2
(-3) 		218
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189517_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5919
Sequence Type Exemplar sequence
Representative Public ID T13B5.3 NCBI
Target Description T13B5.3 /REP_DB=WormBase Gene ID /WP=CE13607 /TR=O17373 /GB=AAB71294.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=acid phosphatase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061510(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061510 NCBI Caenorhabditis elegans T13B5.3 (T13B5.3) mRNA, complete cds. 11/11 None
SNAP00000003624 ENSEMBL cdna:SNAP chromosome:CEL140:II:1097972:1102730:-1 11/11 None
GENEFINDER00000003636 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:1097972:1100818:-1 11/11 None
T13B5.3 ENSEMBL cdna:known chromosome:CEL140:II:1097972:1100818:-1 gene:T13B5.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:1097970-1100817(-) 100.0 100.0
Public Domain and Genome References
Gene Title acid phosphatase
Ensembl T13B5.3
Entrez Gene 188466 Entrez gene
SwissProt O17373 EMBL-EBI
WormBase CE13607 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6979 response to oxidative stress inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3993 acid phosphatase activity inferred from electronic annotation QuickGO AmiGO
4601 peroxidase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB71294 Hypothetical protein T13B5.3 [Caenorhabditis elegans] ref|NP_493911.1| T13B5.3 [Caenorhabditis elegans] 0.0
blast CAE62982 Hypothetical protein CBG07203 [Caenorhabditis briggsae] 0.0
blast AAA83593 Intestinal acid phosphatase protein 1 [Caenorhabditis elegans] ref|NP_494983.1| intestinal acid PHOsphatase family member (pho-1) [Caenorhabditis elegans] 2.0E-56
Protein Domains
Database ID Description E-Value
Pfam IPR000560 EMBL-EBI Histidine acid phosphatase 8.5E-24
Pfam IPR000560 EMBL-EBI Histidine acid phosphatase 3.3E-12
Pfam IPR000560 EMBL-EBI Histidine acid phosphatase 8.5E-24
Sequence
Target Sequence 
>C. ELEGANS:189517_AT
gtgtccacgagattcctctttggaattggagacccctacatcccggagctcatcagactg
agaggaggccctcttttgcgtgcgatgatggacaaaatgaatcaaaaattgagctgcttg
gcgaaaaataatgagggagaagattgcagctggattggaaaacttaagtatcatgcttat
agtgctcacgacacaactgtctacgccttcctgaccacttttggtgacgaggagcgagtt
atcgaaggcggtatgccgcactacactgcctctgttgcagtggaactttggaatttgaaa
aatggaggaccaagtgtcagggttctgttccacagcgctttccatcacaactaccacgtc
atcacccatctggcaaagggttgtccccataattcagagttctgcccgttgaaaactttc
gagcagcgcagtcttaaattcctaccagtcaacctgcaaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGTCCACGAGATTCCTCTTTGGAA 616 487 811 Antisense
TTGGAATTGGAGACCCCTACATCCC 231 705 830 Antisense
TGAGAGGAGGCCCTCTTTTGCGTGC 52 567 869 Antisense
GTGCTCACGACACAACTGTCTACGC 96 481 992 Antisense
CCTTCCTGACCACTTTTGGTGACGA 489 269 1016 Antisense
AAGGCGGTATGCCGCACTACACTGC 369 159 1055 Antisense
AAGTGTCAGGGTTCTGTTCCACAGC 69 159 1122 Antisense
CCCATCTGGCAAAGGGTTGTCCCCA 458 259 1175 Antisense
TGTCCCCATAATTCAGAGTTCTGCC 529 555 1192 Antisense
AGCAGCGCAGTCTTAAATTCCTACC 104 77 1232 Antisense
AATTCCTACCAGTCAACCTGCAAAA 16 177 1247 Antisense
Sequence Source Affymetrix Proprietary Database