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[189512_at] cytochrome P450

Description C03G6.15 /REP_DB=WormBase Gene ID /WP=CE07889 /TR=O02628 /GB=AAB52315.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=cytochrome P450
Cluster 6grp_highest_10_10 > 37      6grp_high1_10_10 > 73      4grp_highest_8_8 > 15      4grp_high_8_8 > 14      6grp_highest_nonorm > 53      6grp_total > 63      4grp_total > 09      6grp_highest_sub > 03_04      6grp_cgc > 75      6grp_high1_sub > 03_04      6grp_cgc_sub > 03_04      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1455
1 2 3 4 range
A 460.9
(-3)
P 		499.7
(-2.8)
P 		606.6
(-2.1)
P 		1411.6
(3)
P 		951
B 443
(-3)
P 		678.4
(-2)
P 		591
(-2.4)
P 		1898.4
(3)
P 		1455
C 487.1
(-3)
P 		557.9
(-2.7)
P 		636.2
(-2.3)
P 		1809
(3)
P 		1322
avr 463.7
(-3) 		578.7
(-2.4) 		611.3
(-2.3) 		1706.3
(3) 		1243

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1285
1 2 3 4 5 6 range
A 310.1
(-3)
P 		724.8
(-0.4)
P 		1269.1
(3)
P 		1089.6
(1.9)
P 		970.9
(1.1)
P 		765.8
(-0.1)
P 		959
B 311.8
(-3)
P 		801.8
(-0.7)
P 		1595.2
(3)
P 		979.4
(0.1)
P 		833.9
(-0.6)
P 		755.7
(-0.9)
P 		1283
C 383.5
(-3)
P 		649.2
(-1.4)
P 		1234.7
(2.1)
P 		1382.9
(3)
P 		823.7
(-0.4)
P 		935.9
(0.3)
P 		999
avr 335.1
(-3) 		725.3
(-0.7) 		1366.3
(3) 		1150.6
(1.7) 		876.2
(0.1) 		819.1
(-0.2) 		1031
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 296
1 2 3 4 range
A 167.8
(0.6)
P 		108.5
(-3)
P 		158.6
(0.1)
P 		206.6
(3)
P 		98
B 141.3
(-2.9)
P 		167.6
(-2.3)
P 		137
(-3)
P 		404.5
(3)
P 		268
C 161.2
(-3)
P 		160.4
(-3)
P 		221.7
(-0.5)
P 		305
(3)
P 		145
avr 156.8
(-2.6) 		145.5
(-3) 		172.4
(-2) 		305.4
(3) 		160

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 330
1 2 3 4 5 6 range
A 57.2
(-3)
P 		257.8
(2.1)
P 		276.4
(2.6)
P 		276.4
(2.6)
P 		293
(3)
P 		186.4
(0.3)
P 		236
B 108.5
(-3)
P 		266.9
(0.4)
P 		387.4
(3)
P 		259.4
(0.2)
P 		338.8
(2)
P 		281.8
(0.7)
P 		279
C 142.1
(-3)
P 		198.1
(-1)
P 		314.3
(3)
P 		278.1
(1.7)
P 		266.5
(1.3)
P 		313.3
(3)
P 		172
avr 102.6
(-3) 		240.9
(0.7) 		326
(3) 		271.3
(1.5) 		299.4
(2.3) 		260.5
(1.2) 		223
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189512_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11906
Sequence Type Exemplar sequence
Representative Public ID C03G6.15 NCBI
Target Description C03G6.15 /REP_DB=WormBase Gene ID /WP=CE07889 /TR=O02628 /GB=AAB52315.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=cytochrome P450
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072479(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072479 NCBI Caenorhabditis elegans CYtochrome P450 family member (cyp-35A2) (cyp-35A2) mRNA, complete cds. 11/11 None
SNAP00000031556 ENSEMBL cdna:SNAP chromosome:CEL140:V:7365005:7366410:-1 11/11 None
GENEFINDER00000031569 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:7365005:7366765:-1 11/11 None
C03G6.15 ENSEMBL cdna:known chromosome:CEL140:V:7364931:7366775:-1 gene:C03G6.15 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:7365005-7366766(-) 100.0 100.0
Public Domain and Genome References
Gene Title cytochrome P450
Gene Symbol cyp-35A2
Ensembl C03G6.15
Entrez Gene 182177 Entrez gene
SwissProt O02628 EMBL-EBI
WormBase CE35217 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4497 monooxygenase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB52315 Cytochrome p450 family protein 35A2 [Caenorhabditis elegans] ref|NP_504880.2| CYtochrome P450 family member (cyp-35A2) [Caenorhabditis elegans] 0.0
blast AAF39921 Cytochrome p450 family protein 35A3 [Caenorhabditis elegans] ref|NP_504121.1| CYtochrome P450 family member (cyp-35A3) [Caenorhabditis elegans] 0.0
blast AAK18902 Hypothetical protein C49G7.8 [Caenorhabditis elegans] ref|NP_504124.1| CYtochrome P450 family member (cyp-35A4) [Caenorhabditis elegans] 0.0
Protein Families
Method ID Description E-Value
p450 CP1B_MOUSE Animalia; CYP1B-1; mou; CP1B_MOUSE; Mus musculus; Q64429 1.0E-110
p450 CP1B_MOUSE Animalia; CYP1B-1; mou; CP1B_MOUSE; Mus musculus; Q64429 1.0E-148
Protein Domains
Database ID Description E-Value
Pfam IPR001128 EMBL-EBI Cytochrome P450 6.7E-85
Pfam IPR001128 EMBL-EBI Cytochrome P450 8.4E-62
Sequence
Target Sequence 
>C. ELEGANS:189512_AT
tacacttatttctggtttcaatcaacttttattacatccagaagttatgattaaagcaag
agaagaaatactaaaaataacggaaaatggctctcgacatcttagccttactgatcgtac
ctcaactccttatgtgaatgcagtgattggagaaattcaacgtcatgcatccattcttaa
cgtcagcttctggaaaatcaataaggagttcacatacatgggaggtcacccagttgatgc
tggtgctctggtcacttctcaactcagtgctctccatgttaatgaaactgtcttcaaaaa
cccacaagaatttaatccggaaagattcattcgagatgggaagcttcttcagaaagtgat
tccttttggagttgggaagagaaattgtttgggtgaatctttagccaaagcagaattgta
tttgatcttcggtaaccttctccttcgctacaaattcgaacaacatggcaaattatccac
taccgagcttatgccatacagcgct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TACACTTATTTCTGGTTTCAATCAA 525 641 957 Antisense
TCAATCAACTTTTATTACATCCAGA 503 631 974 Antisense
TCAACGTCATGCATCCATTCTTAAC 427 631 1113 Antisense
CCATTCTTAACGTCAGCTTCTGGAA 647 269 1127 Antisense
ATGGGAGGTCACCCAGTTGATGCTG 201 51 1174 Antisense
CAGTTGATGCTGGTGCTCTGGTCAC 176 207 1187 Antisense
GCTCTCCATGTTAATGAAACTGTCT 379 299 1225 Antisense
ATTTGATCTTCGGTAACCTTCTCCT 254 17 1376 Antisense
CCTTCTCCTTCGCTACAAATTCGAA 276 267 1392 Antisense
GCAAATTATCCACTACCGAGCTTAT 669 317 1424 Antisense
TACCGAGCTTATGCCATACAGCGCT 452 649 1437 Antisense
Sequence Source Affymetrix Proprietary Database