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[189511_at]

Description Y47G6A.5 /REP_DB=WormBase Gene ID /WP=CE22093 /TR=Q9N3S5 /GB=AAF60657.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation /DEF=tyrosine kinase
Cluster 6grp_total > 40      4grp_total > 27      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 44
1 2 3 4 range
A 95.6
(2.6)
P 		87.1
(1.4)
A 		55.2
(-3)
A 		98.8
(3)
A 		44
B 62.6
(-3)
A 		75.7
(-0.6)
A 		78.3
(-0.1)
A 		94.8
(3)
A 		32
C 77.6
(-2.4)
P 		97.6
(3)
A 		75.5
(-3)
A 		89.7
(0.9)
A 		22
avr 78.6
(-0.8) 		86.8
(1.2) 		69.7
(-3) 		94.4
(3) 		25

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 86
1 2 3 4 5 6 range
A 68.9
(3)
A 		40.3
(-0.5)
A 		53.2
(1.1)
A 		68
(2.9)
A 		20.4
(-3)
A 		49.7
(0.6)
A 		49
B 73.9
(1.7)
A 		73
(1.6)
A 		71.9
(1.5)
A 		83.5
(3)
A 		37.7
(-3)
A 		49.3
(-1.5)
A 		46
C 80.1
(0.2)
A 		106.1
(3)
A 		79.9
(0.2)
A 		93.7
(1.7)
A 		50.1
(-3)
A 		65.4
(-1.4)
A 		56
avr 74.3
(2) 		73.1
(1.9) 		68.3
(1.2) 		81.7
(3) 		36.1
(-3) 		54.8
(-0.5) 		46
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 34.8
(3)
P 		18.9
(-1.7)
A 		14.4
(-3)
A 		14.5
(-3)
A 		20
B 20
(2.4)
A 		18.7
(-1.5)
A 		18.2
(-3)
A 		20.2
(3)
A 		2
C 25.7
(1.9)
P 		28.1
(3)
A 		26.3
(2.2)
A 		15.1
(-3)
A 		13
avr 26.8
(3) 		21.9
(0.1) 		19.6
(-1.2) 		16.6
(-3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 26
1 2 3 4 5 6 range
A 12.7
(0.5)
A 		14.3
(1.4)
A 		11.6
(-0.1)
A 		17.3
(3)
A 		6.1
(-3)
A 		12.1
(0.2)
A 		11
B 25.7
(3)
A 		24.3
(2.2)
A 		17.5
(-1.7)
A 		22.1
(0.9)
A 		15.3
(-3)
A 		18.4
(-1.2)
A 		10
C 29.7
(2)
A 		32.4
(3)
A 		20.3
(-1.5)
A 		18.8
(-2)
A 		16.2
(-3)
A 		21.9
(-0.9)
A 		16
avr 22.7
(2.5) 		23.7
(3) 		16.5
(-0.9) 		19.4
(0.7) 		12.5
(-3) 		17.5
(-0.3) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189511_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.285
Sequence Type Exemplar sequence
Representative Public ID Y47G6A.5 NCBI
Target Description Y47G6A.5 /REP_DB=WormBase Gene ID /WP=CE22093 /TR=Q9N3S5 /GB=AAF60657.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation /DEF=tyrosine kinase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058774(11), NM_182006(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058774 NCBI Caenorhabditis elegans Y47G6A.5a (Y47G6A.5) mRNA, complete cds. 11/11 None
NM_182006 NCBI Caenorhabditis elegans Y47G6A.5b (Y47G6A.5) mRNA, complete cds. 11/11 None
SNAP00000033986 ENSEMBL cdna:SNAP chromosome:CEL140:I:3533996:3551851:1 11/11 None
GENEFINDER00000034079 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:3534808:3538903:1 11/11 None
Y47G6A.5a ENSEMBL cdna:known chromosome:CEL140:I:3533823:3539158:1 gene:Y47G6A.5 11/11 None
Y47G6A.5b ENSEMBL cdna:known chromosome:CEL140:I:3534703:3538903:1 gene:Y47G6A.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:3533822-3538903(+) 98.64 100.0
Public Domain and Genome References
Ensembl Y47G6A.5
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_491175 Y47G6A.5a [Caenorhabditis elegans] gb|AAF60657.1| Hypothetical protein Y47G6A.5a [Caenorhabditis elegans] 0.0
blast NP_871806 Y47G6A.5b [Caenorhabditis elegans] gb|AAO12400.1| Hypothetical protein Y47G6A.5b [Caenorhabditis elegans] 0.0
blast CAE68957 Hypothetical protein CBG14937 [Caenorhabditis briggsae] 0.0
blast NP_491178 Y47G6A.4 [Caenorhabditis elegans] gb|AAF60656.1| Hypothetical protein Y47G6A.4 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000980 EMBL-EBI SH2 motif 1.4E-12
Pfam IPR001452 EMBL-EBI SH3 3.9E-9
Pfam IPR000719 EMBL-EBI Protein kinase 7.4E-61
Pfam IPR000980 EMBL-EBI SH2 motif 1.4E-12
Pfam IPR001452 EMBL-EBI SH3 3.9E-9
Pfam IPR000719 EMBL-EBI Protein kinase 7.4E-61
Pfam IPR000980 EMBL-EBI SH2 motif 1.4E-12
Pfam IPR001452 EMBL-EBI SH3 3.9E-9
Pfam IPR000719 EMBL-EBI Protein kinase 7.2E-59
Sequence
Target Sequence 
>C. ELEGANS:189511_AT
aaagctcacaaaaactcttccaccaattcccctgatgagtgaagagaccggaagaaagaa
tgttttgattggagcgagtatctctgcgcaggtggcttccggtatggattacctatcggc
aaataagattgttcatcgagatttggccgcaagaaatgttcttgttggaacagtttcgtc
aaatggagtgcctcttgtgaaagttgcggattttggtttggcacgaaaaacagacgttgg
agatgagaattatgtgatgaaaactgataatatgttgccgtggaaatggatggcgcctga
gtgttttgatgaacagattttcaacacaaaaaccgacgtctggtcgtacggaattcttct
ctgggagattggaactcttggaaaaacaccatatcgaggatgggattacgagggaacact
tgaacatctgtcacgtggatatgtgctgccacgtcctgaactggttccggattacgtgta
cgaggatgcgttcaaaatttgtgtccacctggatccgcggcgccgtccgacgttcgatcg
attgttc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAAGCTCACAAAAACTCTTCCACCA 52 125 1389 Antisense
TTCCACCAATTCCCCTGATGAGTGA 23 699 1406 Antisense
AGCGAGTATCTCTGCGCAGGTGGCT 432 79 1461 Antisense
GCAGGTGGCTTCCGGTATGGATTAC 295 309 1476 Antisense
GAGTGCCTCTTGTGAAAGTTGCGGA 317 401 1574 Antisense
GGATGGCGCCTGAGTGTTTTGATGA 89 515 1676 Antisense
GTCTGGTCGTACGGAATTCTTCTCT 123 471 1726 Antisense
GGGAACACTTGAACATCTGTCACGT 61 495 1800 Antisense
GAACTGGTTCCGGATTACGTGTACG 668 347 1846 Antisense
AAAATTTGTGTCCACCTGGATCCGC 628 133 1882 Antisense
CCGTCCGACGTTCGATCGATTGTTC 573 263 1911 Antisense
Sequence Source Affymetrix Proprietary Database