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[189509_s_at] phospholipase A2

Description F35C11.5 /REP_DB=WormBase Gene ID /WP=CE03285 /TR=Q20022 /GB=CAA90245.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=phospholipase A2
Cluster 6grp_highest_10_10 > 88      6grp_high1_10_10 > 88      4grp_highest_8_8 > 07      4grp_high_8_8 > 14      6grp_highest_nonorm > 93      6grp_total > 97      4grp_total > 10      6grp_highest_sub > Da      6grp_high1_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 342
1 2 3 4 range
A 147.3
(-3)
P 		225.8
(-1.6)
P 		215.1
(-1.8)
P 		489.1
(3)
P 		342
B 199.3
(-2.8)
P 		224.4
(-2.3)
P 		188.7
(-3)
P 		476.1
(3)
P 		287
C 151.3
(-3)
P 		236.7
(-0.9)
P 		194.5
(-2)
P 		400.5
(3)
P 		249
avr 166
(-3) 		229
(-1.7) 		199.4
(-2.3) 		455.2
(3) 		289

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 825
1 2 3 4 5 6 range
A 316.1
(-1.8)
P 		154.4
(-3)
P 		170.9
(-2.9)
P 		296.2
(-2)
P 		606.2
(0.3)
P 		979.3
(3)
P 		825
B 206.4
(-3)
P 		209.3
(-3)
P 		229.6
(-2.8)
P 		229.7
(-2.8)
P 		633
(0.6)
P 		916
(3)
P 		710
C 189.2
(-2.9)
P 		171.9
(-3)
P 		255.3
(-2.3)
P 		377.8
(-1.4)
P 		595.2
(0.3)
P 		940.9
(3)
P 		769
avr 237.2
(-2.5) 		178.5
(-3) 		218.6
(-2.7) 		301.2
(-2) 		611.5
(0.4) 		945.4
(3) 		767
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 58
1 2 3 4 range
A 53.6
(-1.8)
P 		49
(-3)
P 		56.2
(-1.1)
P 		71.6
(3)
P 		23
B 63.5
(-0.9)
P 		55.4
(-1.8)
P 		43.7
(-3)
P 		101.5
(3)
P 		58
C 50.1
(-3)
P 		68.1
(3)
P 		67.8
(2.9)
P 		67.5
(2.8)
P 		18
avr 55.7
(-3) 		57.5
(-2.6) 		55.9
(-3) 		80.2
(3) 		25

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 304
1 2 3 4 5 6 range
A 58.3
(-2.4)
P 		54.9
(-2.5)
P 		37.2
(-3)
P 		75.1
(-1.9)
P 		182.9
(1.3)
P 		238.4
(3)
P 		201
B 71.8
(-2.7)
P 		69.7
(-2.7)
P 		55.8
(-3)
P 		60.8
(-2.9)
P 		257.2
(1.2)
P 		341.6
(3)
P 		286
C 70.1
(-2.6)
P 		52.5
(-3)
P 		65
(-2.7)
P 		76
(-2.5)
P 		192.6
(0.2)
P 		315
(3)
P 		263
avr 66.7
(-2.7) 		59
(-2.8) 		52.7
(-3) 		70.6
(-2.6) 		210.9
(0.9) 		298.3
(3) 		246
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 189509_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3425
Sequence Type Exemplar sequence
Representative Public ID F35C11.5 NCBI
Target Description F35C11.5 /REP_DB=WormBase Gene ID /WP=CE03285 /TR=Q20022 /GB=CAA90245.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=phospholipase A2
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063338(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063338 NCBI Caenorhabditis elegans F35C11.5 (F35C11.5) mRNA, complete cds. 11/11 None
SNAP00000018025 ENSEMBL cdna:SNAP chromosome:CEL140:II:8253677:8254908:1 11/11 None
GENEFINDER00000018030 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:8249869:8254908:1 11/11 None
F35C11.5 ENSEMBL cdna:known chromosome:CEL140:II:8253190:8255191:1 gene:F35C11.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:8253186-8254905(+) 100.0 100.0
Public Domain and Genome References
Gene Title phospholipase A2
Ensembl F35C11.5
Entrez Gene 174325 Entrez gene
SwissProt Q20022 EMBL-EBI
WormBase CE03285 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
9401 phosphoenolpyruvate-dependent sugar phosphotransferase system inferred from electronic annotation QuickGO AmiGO
16042 lipid catabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4623 phospholipase A2 activity inferred from electronic annotation QuickGO AmiGO
5351 sugar porter activity inferred from electronic annotation QuickGO AmiGO
5509 calcium ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA90245 Hypothetical protein F35C11.5 [Caenorhabditis elegans] ref|NP_495739.1| F35C11.5 [Caenorhabditis elegans] 0.0
blast CAA90244 Hypothetical protein F35C11.4 [Caenorhabditis elegans] ref|NP_495738.1| F35C11.4 [Caenorhabditis elegans] 0.0
blast CAA90245 Hypothetical protein F35C11.5 [Caenorhabditis elegans] ref|NP_495739.1| F35C11.5 [Caenorhabditis elegans] 1.0E-172
blast CAE57667 Hypothetical protein CBG00660 [Caenorhabditis briggsae] 1.0E-139
blast CAE57669 Hypothetical protein CBG00662 [Caenorhabditis briggsae] 1.0E-112
blast AAA83608 Hypothetical protein C31H1.5 [Caenorhabditis elegans] ref|NP_500864.2| C31H1.5 [Caenorhabditis elegans] 4.0E-14
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_495739.1 4 46-68,102-121,141-160,389-411
F35C11.5 4 46-68,102-121,141-160,389-411
SNAP00000018025 1 249-271
GENEFINDER00000018030 5 13-35,221-243,377-399,438-457,686-708
Sequence
Target Sequence 
>C. ELEGANS:189509_S_AT
agatgatgcatgtctcattctcgcagtgctcggctggtccgcctatggtgattcaaatta
cactgatcctacgaaaccatcagcaaatgtgttggttacacctgagacagttccgaaaat
ggagagtgacttcatgaatttatattccaagtgtccttatgccaatataaccctcgcttc
atgtgctaataatttcgatctctgtgccgttgttcattctgtggatttctgcgccaatga
tctttgccactgtatgttggatgctgccgaatcagacgatattcacaagaaagaatgttc
cccagcagtagctcatacttgcagagctgttttgagacattcgagtgacgtgcttgcttc
ccgaagtgtcaccagaaacttcattatcatcgctcttcttgttcttgccgcagcctcagt
tggtttcggacttttcttcatgtacacacgagttgctggagagagaaagaaggtcgaaga
aggcaaatatctgcaaattcacactgtggagtcggcccg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGATGATGCATGTCTCATTCTCGCA 300 67 798 Antisense
CTGGTCCGCCTATGGTGATTCAAAT 26 241 831 Antisense
ATATTCCAAGTGTCCTTATGCCAAT 422 19 939 Antisense
AACCCTCGCTTCATGTGCTAATAAT 663 145 966 Antisense
ATAATTTCGATCTCTGTGCCGTTGT 161 25 986 Antisense
TCTGTGCCGTTGTTCATTCTGTGGA 489 607 998 Antisense
TCTGTGGATTTCTGCGCCAATGATC 90 609 1015 Antisense
GCCAATGATCTTTGCCACTGTATGT 324 277 1030 Antisense
TCCCCAGCAGTAGCTCATACTTGCA 150 597 1096 Antisense
GTTTCGGACTTTTCTTCATGTACAC 256 451 1220 Antisense
AAATTCACACTGTGGAGTCGGCCCG 147 115 1292 Antisense
Sequence Source Affymetrix Proprietary Database