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[189507_at]

Description C23H3.4 /REP_DB=WormBase Gene ID /WP=CE08323 /TR=P91079 /GB=AAK31446.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=aminotransferase
Cluster 6grp_highest_10_10 > 35      6grp_high1_10_10 > 41      4grp_highest_8_8 > 33      4grp_high_8_8 > 58      6grp_highest_nonorm > 33      6grp_total > 41      4grp_total > 61      6grp_highest_sub > 03      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 885
1 2 3 4 range
A 1299.1
(1)
P 		1441
(2.5)
P 		1492.7
(3)
P 		920.2
(-3)
P 		573
B 1805.2
(3)
P 		1267
(-0.7)
P 		1350.5
(-0.2)
P 		941.9
(-3)
P 		863
C 1648.9
(3)
P 		1264.8
(-0.3)
P 		1629
(2.8)
P 		948.6
(-3)
P 		700
avr 1584.4
(3) 		1324.3
(0.6) 		1490.7
(2.1) 		936.9
(-3) 		648

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1649
1 2 3 4 5 6 range
A 1370.4
(-2.1)
P 		2230.3
(2.4)
P 		2311.8
(2.9)
P 		2338.4
(3)
P 		1193.5
(-3)
P 		1304.4
(-2.4)
P 		1145
B 1430.5
(-1.4)
P 		1975.7
(2)
P 		2140.4
(3)
P 		1749.7
(0.6)
P 		1252.5
(-2.5)
P 		1170.7
(-3)
P 		970
C 1870.7
(-0.6)
P 		1946.2
(-0.3)
P 		2819.3
(3)
P 		1993
(-0.2)
P 		1358.9
(-2.6)
P 		1254.8
(-3)
P 		1565
avr 1557.2
(-1.4) 		2050.7
(1.1) 		2423.8
(3) 		2027
(1) 		1268.3
(-2.9) 		1243.3
(-3) 		1181
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 441
1 2 3 4 range
A 473
(3)
P 		312.8
(0.2)
P 		390.2
(1.5)
P 		134.7
(-3)
P 		338
B 575.6
(3)
P 		312.9
(-1.2)
P 		312.9
(-1.2)
P 		200.7
(-3)
P 		375
C 545.8
(2.7)
P 		363.6
(-0)
P 		567.7
(3)
P 		159.9
(-3)
P 		408
avr 531.5
(3) 		329.8
(-0.3) 		423.6
(1.2) 		165.1
(-3) 		366

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 541
1 2 3 4 5 6 range
A 252.6
(-3)
P 		793.2
(3)
P 		503.5
(-0.2)
P 		593.1
(0.8)
P 		360.2
(-1.8)
P 		317.6
(-2.3)
P 		541
B 497.7
(-1.3)
P 		657.6
(3)
P 		519.8
(-0.7)
P 		463.4
(-2.3)
P 		508.9
(-1)
P 		436.5
(-3)
P 		221
C 693.4
(2.5)
P 		593.8
(0.7)
P 		717.6
(3)
P 		400.8
(-3)
P 		439.7
(-2.3)
P 		420
(-2.6)
P 		317
avr 481.2
(-1.1) 		681.5
(3) 		580.3
(0.9) 		485.8
(-1) 		436.3
(-2.1) 		391.4
(-3) 		290
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189507_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4337
Sequence Type Exemplar sequence
Representative Public ID C23H3.4 NCBI
Target Description C23H3.4 /REP_DB=WormBase Gene ID /WP=CE08323 /TR=P91079 /GB=AAK31446.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=aminotransferase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026807(11), NM_001026808(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001026807 NCBI Caenorhabditis elegans Serine Palmitoyl Transferase famiLy family member (sptl-1) (sptl-1) mRNA, complete cds. 11/11 None
NM_001026808 NCBI Caenorhabditis elegans Serine Palmitoyl Transferase famiLy family member (sptl-1) (sptl-1) mRNA, complete cds. 11/11 None
SNAP00000015917 ENSEMBL cdna:SNAP chromosome:CEL140:II:56638:57425:1 10/11 None
GENEFINDER00000015928 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:56816:57425:1 10/11 None
C23H3.4a.3 ENSEMBL cdna:known chromosome:CEL140:II:51072:57576:1 gene:C23H3.4 11/11 None
C23H3.4a.1 ENSEMBL cdna:known chromosome:CEL140:II:51650:57576:1 gene:C23H3.4 11/11 None
C23H3.4a.2 ENSEMBL cdna:known chromosome:CEL140:II:51652:57576:1 gene:C23H3.4 11/11 None
C23H3.4b ENSEMBL cdna:known chromosome:CEL140:II:51675:57425:1 gene:C23H3.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:51658-57425(+) 100.0 100.0
Public Domain and Genome References
Ensembl C23H3.4
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK31446 Serine palmitoyl transferase family protein 1, isoform a [Caenorhabditis elegans] ref|NP_001021978.1| Serine Palmitoyl Transferase famiLy family member (sptl-1) [Caenorhabditis elegans] 0.0
blast AAV58885 Serine palmitoyl transferase family protein 1, isoform b [Caenorhabditis elegans] ref|NP_001021979.1| Serine Palmitoyl Transferase famiLy family member (sptl-1) [Caenorhabditis elegans] 0.0
blast CAE62820 Hypothetical protein CBG06999 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR004839 EMBL-EBI Aminotransferase, class I and II 4.1E-16
Pfam IPR004839 EMBL-EBI Aminotransferase, class I and II 4.1E-16
Sequence
Target Sequence 
>C. ELEGANS:189507_AT
gaagaggagtcaccgagcacttcaacgttccgatggaggacgttgatatggtaatggcct
cactcgaaaacgcattggcgtcaactggaggattctgtgttggaagatcatatgtagttg
ggcatcagcggctttcaggactcggatattgcttttctgcttctcttccacctcttcttg
caacggccgcgtctgaagctatttctatcattgatgaagaaccaagtagagttcaaaaag
ttactgaaatggctataaatggtcagaaaaagctacaagatgcgctgagtggatcgaaat
tttcattgcaaggatgtccagaaagtccaatgaagcatatctattacaatggggaagatg
aagaaaagcaattggatacatttgtggagacagtcttcacaaaaaatcatctcctactga
ccagagctcgatacctcgacaaggacgaattgttcaaaattcggccaagcattcgagtaa
tgttccaacacgacttaactga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGAGGAGTCACCGAGCACTTCAA 141 339 833 Antisense
AGCACTTCAACGTTCCGATGGAGGA 239 77 848 Antisense
GGTAATGGCCTCACTCGAAAACGCA 45 505 882 Antisense
ATTGGCGTCAACTGGAGGATTCTGT 367 3 906 Antisense
TGTAGTTGGGCATCAGCGGCTTTCA 652 559 945 Antisense
CGGCTTTCAGGACTCGGATATTGCT 11 243 961 Antisense
TCGGATATTGCTTTTCTGCTTCTCT 192 607 974 Antisense
CCGCGTCTGAAGCTATTTCTATCAT 650 261 1019 Antisense
AAATCATCTCCTACTGACCAGAGCT 293 117 1236 Antisense
TGACCAGAGCTCGATACCTCGACAA 379 567 1250 Antisense
TAATGTTCCAACACGACTTAACTGA 658 635 1310 Antisense
Sequence Source Affymetrix Proprietary Database