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[189505_at] carboxylesterase

Description B0238.7 /REP_DB=WormBase Gene ID /WP=CE07697 /TR=O16490 /GB=AAB65993.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=carboxylesterase
Cluster 6grp_total > 68      4grp_total > 02      6grp_total_sub > Increase      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 318
1 2 3 4 range
A 6.4
(-2.9)
A 		3.5
(-3)
A 		4
(-3)
A 		302.3
(3)
P 		299
B 3.6
(-3)
A 		7.4
(-2.9)
A 		5.6
(-3)
A 		321.5
(3)
P 		318
C 10.9
(-3)
A 		12.8
(-3)
A 		15.5
(-2.9)
A 		321.9
(3)
P 		311
avr 7
(-3) 		7.9
(-3) 		8.4
(-3) 		315.2
(3) 		308

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 198
1 2 3 4 5 6 range
A 68.5
(1.2)
A 		6.3
(-3)
A 		6.6
(-2.9)
A 		5.7
(-3)
A 		27.8
(-1.5)
A 		94.7
(3)
A 		89
B 4.3
(-3)
A 		3.5
(-3)
A 		3.7
(-3)
A 		10.1
(-2.8)
A 		47.5
(-1.7)
A 		201
(3)
P 		198
C 39.3
(-1.7)
A 		57.6
(-0.9)
A 		8.6
(-2.9)
A 		31.5
(-2)
A 		7.3
(-3)
A 		154.5
(3)
P 		147
avr 37.4
(-1.7) 		22.5
(-2.3) 		6.3
(-3) 		15.8
(-2.6) 		27.5
(-2.1) 		150.1
(3) 		144
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 68
1 2 3 4 range
A 2.3
(-2.8)
A 		0.8
(-3)
A 		1
(-3)
A 		44.3
(3)
P 		44
B 1.2
(-3)
A 		1.8
(-2.9)
A 		1.3
(-3)
A 		68.5
(3)
P 		67
C 3.6
(-3)
A 		3.7
(-3)
A 		5.4
(-2.8)
A 		54.3
(3)
P 		51
avr 2.4
(-3) 		2.1
(-3) 		2.6
(-2.9) 		55.7
(3) 		54

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 74
1 2 3 4 5 6 range
A 12.6
(0.1)
A 		2.2
(-2.8)
A 		1.4
(-3)
A 		1.4
(-3)
A 		8.4
(-1.1)
A 		23
(3)
A 		22
B 1.5
(-3)
A 		1.2
(-3)
A 		0.9
(-3)
A 		2.7
(-2.9)
A 		19.3
(-1.5)
A 		75
(3)
P 		74
C 14.6
(-1.5)
A 		17.6
(-1.1)
A 		2.2
(-3)
A 		6.3
(-2.5)
A 		2.4
(-3)
A 		51.7
(3)
P 		50
avr 9.6
(-2) 		7
(-2.3) 		1.5
(-3) 		3.5
(-2.8) 		10
(-1.9) 		49.9
(3) 		48
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189505_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12388
Sequence Type Exemplar sequence
Representative Public ID B0238.7 NCBI
Target Description B0238.7 /REP_DB=WormBase Gene ID /WP=CE07697 /TR=O16490 /GB=AAB65993.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=carboxylesterase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072006(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072006 NCBI Caenorhabditis elegans B0238.7 (carboxylesterase) mRNA, complete cds. 11/11 None
SNAP00000038871 ENSEMBL cdna:SNAP chromosome:CEL140:V:5260144:5261677:-1 11/11 None
GENEFINDER00000038886 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:5260144:5262911:-1 11/11 None
B0238.7 ENSEMBL cdna:known chromosome:CEL140:V:5260144:5262911:-1 gene:B0238.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:5260143-5262911(-) 100.0 100.0
Public Domain and Genome References
Gene Title carboxylesterase
Ensembl B0238.7
Entrez Gene 181871 Entrez gene
SwissProt O16490 EMBL-EBI
WormBase CE07697 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB65993 Hypothetical protein B0238.7 [Caenorhabditis elegans] ref|NP_504407.1| B0238.7 [Caenorhabditis elegans] 0.0
blast AAK68261 Hypothetical protein C52A10.1 [Caenorhabditis elegans] ref|NP_504397.1| C52A10.1 [Caenorhabditis elegans] 1.0E-179
blast CAE64096 Hypothetical protein CBG08703 [Caenorhabditis briggsae] 1.0E-176
Protein Domains
Database ID Description E-Value
Pfam IPR002018 EMBL-EBI Carboxylesterase, type B 1.0E-126
Pfam IPR002018 EMBL-EBI Carboxylesterase, type B 7.6E-114
Sequence
Target Sequence 
>C. ELEGANS:189505_AT
gaaacttatggaccggatgtcacagattattatgcagatgtgaagaaaaaactgaccggt
ttctatttaaaagatgtgaacgcttctgataaagctacagtcaatagaagagtagtagat
tatgtcagcgattctgtgtttaatagtggaactcttgacgctgtgaaatcctacgtcaaa
tatggaaacaaagtttatttgggttcatttaattatttcaatgatgcaaccaaagatatg
gttgagctaatgcaaccattcaaggaagcttctcatagttcggattttaaatattatttt
ggaagtggagtaatggcaaatttcactccaacagatgaagaaatggaagttatggatatg
tctggaaccttgatggcaaattttgttaaatacggcgatccaaacgggaaatcgggaaca
aaaccgtggaaaccgtacaccattctcaaaccgaatatgtattataagattgactatccc
acttgcgaaatgtccgataatttccaaaatggacggctgcgcatttatgatga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAACTTATGGACCGGATGTCACAG 375 357 1132 Antisense
ATAGTGGAACTCTTGACGCTGTGAA 344 21 1274 Antisense
ACGCTGTGAAATCCTACGTCAAATA 43 89 1289 Antisense
ATGCAACCATTCAAGGAAGCTTCTC 357 43 1381 Antisense
GGAAGCTTCTCATAGTTCGGATTTT 481 531 1395 Antisense
GTAATGGCAAATTTCACTCCAACAG 467 455 1441 Antisense
GGATATGTCTGGAACCTTGATGGCA 314 511 1485 Antisense
TGGAAACCGTACACCATTCTCAAAC 428 533 1558 Antisense
TAAGATTGACTATCCCACTTGCGAA 614 635 1596 Antisense
ATCCCACTTGCGAAATGTCCGATAA 248 37 1607 Antisense
ATGGACGGCTGCGCATTTATGATGA 538 51 1640 Antisense
Sequence Source Affymetrix Proprietary Database