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[189504_at] NAM7 like protein

Description C44H9.2 /REP_DB=WormBase Gene ID /WP=CE05419 /TR=Q18630 /GB=CAA99783.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=NAM7 like protein
Cluster 6grp_total > 52      4grp_total > 25      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 30
1 2 3 4 range
A 3.6
(-3)
A 		9.7
(-1.5)
A 		12.3
(-0.9)
A 		28.7
(3)
A 		25
B 14.6
(-1.6)
A 		28.4
(3)
A 		10.5
(-3)
A 		17.3
(-0.7)
A 		18
C 10.6
(-3)
A 		16.7
(-1.4)
A 		19.2
(-0.8)
A 		34
(3)
A 		23
avr 9.6
(-3) 		18.3
(0.1) 		14
(-1.5) 		26.7
(3) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 30
1 2 3 4 5 6 range
A 8.8
(-1.6)
A 		4
(-2.7)
A 		28.9
(3)
A 		9.3
(-1.5)
A 		25.4
(2.2)
A 		2.7
(-3)
A 		26
B 7.5
(-1.9)
A 		6.5
(-2.2)
A 		25.2
(3)
A 		8
(-1.8)
A 		15.9
(0.4)
A 		3.7
(-3)
A 		22
C 12.4
(-1)
A 		7.5
(-2)
A 		32.6
(3)
P 		14.1
(-0.7)
A 		11.3
(-1.3)
A 		2.6
(-3)
A 		30
avr 9.6
(-1.5) 		6
(-2.3) 		28.9
(3) 		10.5
(-1.3) 		17.5
(0.4) 		3
(-3) 		26
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6
1 2 3 4 range
A 1.3
(-3)
A 		2.1
(-1.3)
A 		3.2
(0.9)
A 		4.2
(3)
A 		3
B 4.6
(-0.1)
A 		7
(3)
A 		2.4
(-3)
A 		3.7
(-1.3)
A 		5
C 3.5
(-3)
A 		4.8
(-0.6)
A 		6.7
(3)
A 		5.7
(1.1)
A 		3
avr 3.1
(-3) 		4.6
(3) 		4.1
(1) 		4.5
(2.6) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 8
1 2 3 4 5 6 range
A 1.6
(-2.2)
A 		1.4
(-2.4)
A 		6.3
(1.8)
A 		2.3
(-1.6)
A 		7.7
(3)
A 		0.7
(-3)
A 		7
B 2.6
(-1.6)
A 		2.2
(-2)
A 		6.1
(2.6)
A 		2.1
(-2.2)
A 		6.4
(3)
A 		1.4
(-3)
A 		5
C 4.6
(-0)
A 		2.3
(-1.9)
A 		8.3
(3)
P 		2.8
(-1.5)
A 		3.7
(-0.7)
A 		0.9
(-3)
A 		7
avr 2.9
(-1.1) 		2
(-2) 		6.9
(3) 		2.4
(-1.6) 		5.9
(2) 		1
(-3) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189504_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13387
Sequence Type Exemplar sequence
Representative Public ID C44H9.2 NCBI
Target Description C44H9.2 /REP_DB=WormBase Gene ID /WP=CE05419 /TR=Q18630 /GB=CAA99783.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=NAM7 like protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073811(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073811 NCBI Caenorhabditis elegans C44H9.2 (C44H9.2) mRNA, complete cds. 11/11 None
SNAP00000031458 ENSEMBL cdna:SNAP chromosome:CEL140:V:12833454:12835800:1 11/11 None
GENEFINDER00000031469 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:12833887:12835800:1 11/11 None
C44H9.2 ENSEMBL cdna:known chromosome:CEL140:V:12833454:12835800:1 gene:C44H9.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:12833453-12835800(+) 100.0 100.0
Public Domain and Genome References
Gene Title NAM7 like protein
Ensembl C44H9.2
Entrez Gene 183463 Entrez gene
SwissProt Q18630 EMBL-EBI
WormBase CE05419 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA99783 Hypothetical protein C44H9.2 [Caenorhabditis elegans] ref|NP_506212.1| C44H9.2 [Caenorhabditis elegans] 0.0
blast CAA99786 Hypothetical protein C44H9.4 [Caenorhabditis elegans] ref|NP_506213.2| C44H9.4 [Caenorhabditis elegans] 0.0
blast CAE56882 Hypothetical protein CBG24721 [Caenorhabditis briggsae] 0.0
Sequence
Target Sequence 
>C. ELEGANS:189504_AT
taattggaacttacttcccgactcgtcaagaactgttattgatatgcctgttcttatgaa
acactatttcgttggatgggcattgggaacagtatttggaatagagcaaacgaagcattt
gacagatgaaatgaagagggcaattgtcagaaaagttattcaagattttactactccaga
aaaacttcaaggagaggctaaaacaatttatgaaaatatggaaacgatgcataaagaaca
aataccattgttagaaattttgattgaagcattttttgtgatttacaatccagatgttat
tgtatctaccgcagattcatataaatgtttagtgaagttggatatcctcaaacatgtgtc
caatattcaaatcgatgaagccagccagctacctgaatacacattaatctaccttcttca
aaagttccctaattctggttttggtcttgttggagatattaaacaattaccaccccactg
tgatagt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAATTGGAACTTACTTCCCGACTCG 599 633 1713 Antisense
TCCCGACTCGTCAAGAACTGTTATT 515 597 1728 Antisense
GTTATTGATATGCCTGTTCTTATGA 637 447 1747 Antisense
ACACTATTTCGTTGGATGGGCATTG 122 111 1773 Antisense
GTTATTCAAGATTTTACTACTCCAG 675 447 1867 Antisense
GTTATTGTATCTACCGCAGATTCAT 627 447 2008 Antisense
GATATCCTCAAACATGTGTCCAATA 620 425 2053 Antisense
TGAAGCCAGCCAGCTACCTGAATAC 223 573 2088 Antisense
TACACATTAATCTACCTTCTTCAAA 300 643 2110 Antisense
TTCCCTAATTCTGGTTTTGGTCTTG 420 695 2137 Antisense
ACAATTACCACCCCACTGTGATAGT 372 113 2175 Antisense
Sequence Source Affymetrix Proprietary Database