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[189500_at] UDP-glucuronosyltransferase

Description C18C4.3 /REP_DB=WormBase Gene ID /WP=CE27363 /GB=AAK52183.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=UDP-glucuronosyltransferase
Cluster 6grp_highest_10_10 > 24      6grp_high1_10_10 > 32      4grp_highest_8_8 > 11      4grp_high_8_8 > 39      6grp_highest_nonorm > 61      6grp_total > 31      4grp_total > 40      6grp_cgc > 71      6grp_high1_sub > 02_03      6grp_cgc_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 357
1 2 3 4 range
A 355.9
(-3)
P 		591.5
(1.5)
P 		669.6
(3)
P 		470.5
(-0.8)
P 		314
B 358.3
(-3)
P 		468.5
(-1.1)
P 		712.9
(3)
P 		507.1
(-0.5)
P 		355
C 385.9
(-3)
P 		523.6
(-0.2)
P 		678.3
(3)
P 		549.3
(0.4)
P 		292
avr 366.7
(-3) 		527.9
(0) 		686.9
(3) 		509
(-0.3) 		320

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 588
1 2 3 4 5 6 range
A 500.9
(1)
P 		603.4
(2.2)
P 		667.6
(3)
P 		500.5
(0.9)
P 		254.6
(-2.1)
P 		179.6
(-3)
P 		488
B 504.5
(0.4)
P 		594.3
(1.3)
P 		761.8
(3)
P 		479.8
(0.1)
P 		252.8
(-2.2)
P 		173.5
(-3)
P 		588
C 379.6
(0)
P 		575.1
(3)
P 		503.8
(1.9)
P 		399.2
(0.3)
P 		331.9
(-0.7)
P 		180.4
(-3)
P 		395
avr 461.7
(0.7) 		590.9
(2.3) 		644.4
(3) 		459.8
(0.6) 		279.8
(-1.7) 		177.8
(-3) 		467
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 168
1 2 3 4 range
A 129.6
(0.4)
P 		128.4
(0.4)
P 		175
(3)
P 		68.9
(-3)
P 		106
B 114.2
(-2.4)
P 		115.7
(-2.2)
P 		165.2
(3)
P 		108.1
(-3)
P 		57
C 127.7
(-1.5)
P 		150.5
(-0.6)
P 		236.4
(3)
P 		92.6
(-3)
P 		144
avr 123.8
(-1) 		131.5
(-0.6) 		192.2
(3) 		89.9
(-3) 		102

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 171
1 2 3 4 5 6 range
A 92.3
(-1.3)
P 		214.6
(3)
P 		145.4
(0.6)
P 		126.9
(-0.1)
P 		76.8
(-1.8)
P 		43.7
(-3)
P 		171
B 175.6
(2)
P 		197.8
(3)
P 		185
(2.4)
P 		127.1
(-0.2)
P 		102.7
(-1.3)
P 		64.7
(-3)
P 		133
C 140.7
(1.2)
P 		175.5
(3)
P 		128.2
(0.5)
P 		80.3
(-2)
P 		107.4
(-0.5)
P 		60.4
(-3)
P 		115
avr 136.2
(0.4) 		196
(3) 		152.9
(1.1) 		111.4
(-0.6) 		95.6
(-1.3) 		56.3
(-3) 		140
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189500_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12051
Sequence Type Exemplar sequence
Representative Public ID C18C4.3 NCBI
Target Description C18C4.3 /REP_DB=WormBase Gene ID /WP=CE27363 /GB=AAK52183.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=UDP-glucuronosyltransferase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072063(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072063 NCBI Caenorhabditis elegans C18C4.3 (UDP-glucuronosyltransferase) mRNA, complete cds. 10/11 A 
SNAP00000035598 ENSEMBL cdna:SNAP chromosome:CEL140:V:5547647:5550649:-1 10/11 None
GENEFINDER00000035608 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:5548300:5551807:-1 10/11 None
C18C4.3 ENSEMBL cdna:known chromosome:CEL140:V:5548298:5550659:-1 gene:C18C4.3 10/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:5548299-5550586(-) 100.0 100.0
Public Domain and Genome References
Gene Title UDP-glucuronosyltransferase
Gene Symbol ugt-48
Ensembl C18C4.3
Entrez Gene 178940 Entrez gene
WormBase CE38487 Wormbase
Functional Annotations
Ortholog
ID Title Organism
DROSOPHILA_2:1629836_AT dm
DROSGENOME1:146377_AT dm
HG-U133_PLUS_2:208596_S_AT UDP glucuronosyltransferase 1 family, polypeptide A5 hs
HG-FOCUS:208596_S_AT UDP glucuronosyltransferase 1 family, polypeptide A5 hs
HG-U133A:208596_S_AT UDP glucuronosyltransferase 1 family, polypeptide A5 hs
HG-U133A_2:208596_S_AT UDP glucuronosyltransferase 1 family, polypeptide A5 hs
HG-U133_PLUS_2:207126_X_AT UDP glucuronosyltransferase 1 family, polypeptide A5 hs
HG-U133A:207126_X_AT UDP glucuronosyltransferase 1 family, polypeptide A5 hs
HG-FOCUS:207126_X_AT UDP glucuronosyltransferase 1 family, polypeptide A5 hs
HG-U133A_2:207126_X_AT UDP glucuronosyltransferase 1 family, polypeptide A5 hs
HG-U133_PLUS_2:215125_S_AT UDP glucuronosyltransferase 1 family, polypeptide A5 hs
HG-U133A_2:215125_S_AT UDP glucuronosyltransferase 1 family, polypeptide A5 hs
HG-FOCUS:215125_S_AT UDP glucuronosyltransferase 1 family, polypeptide A5 hs
HG-U133A:215125_S_AT UDP glucuronosyltransferase 1 family, polypeptide A5 hs
HU35KSUBC:RC_AA085987_S_AT UDP glucuronosyltransferase 1 family, polypeptide A5 hs
HUGENEFL:J04093_S_AT UDP glucuronosyltransferase 1 family, polypeptide A5 hs
HG-U133A:204532_X_AT UDP glucuronosyltransferase 1 family, polypeptide A5 hs
HG-U133_PLUS_2:204532_X_AT UDP glucuronosyltransferase 1 family, polypeptide A5 hs
HG-U133A_2:204532_X_AT UDP glucuronosyltransferase 1 family, polypeptide A5 hs
U133_X3P:G13487899_3P_S_AT UDP glucuronosyltransferase 1 family, polypeptide A5 hs
U133_X3P:HS.2056.1.S1_3P_S_AT UDP glucuronosyltransferase 1 family, polypeptide A5 hs
HG-U95AV2:32392_S_AT UDP glucuronosyltransferase 1 family, polypeptide A5 hs
HG-U133_PLUS_2:208596_S_AT UDP glucuronosyltransferase 1 family, polypeptide A4 hs
HG-FOCUS:208596_S_AT UDP glucuronosyltransferase 1 family, polypeptide A4 hs
HG-U133A:208596_S_AT UDP glucuronosyltransferase 1 family, polypeptide A4 hs
HG-U133A_2:208596_S_AT UDP glucuronosyltransferase 1 family, polypeptide A4 hs
HG-U133_PLUS_2:207126_X_AT UDP glucuronosyltransferase 1 family, polypeptide A4 hs
HG-U133A:207126_X_AT UDP glucuronosyltransferase 1 family, polypeptide A4 hs
HG-FOCUS:207126_X_AT UDP glucuronosyltransferase 1 family, polypeptide A4 hs
HG-U133A_2:207126_X_AT UDP glucuronosyltransferase 1 family, polypeptide A4 hs
HG-U133_PLUS_2:215125_S_AT UDP glucuronosyltransferase 1 family, polypeptide A4 hs
HG-U133A_2:215125_S_AT UDP glucuronosyltransferase 1 family, polypeptide A4 hs
HG-FOCUS:215125_S_AT UDP glucuronosyltransferase 1 family, polypeptide A4 hs
HG-U133A:215125_S_AT UDP glucuronosyltransferase 1 family, polypeptide A4 hs
HU35KSUBC:RC_AA085987_S_AT UDP glucuronosyltransferase 1 family, polypeptide A4 hs
HUGENEFL:J04093_S_AT UDP glucuronosyltransferase 1 family, polypeptide A4 hs
HG-U133A:204532_X_AT UDP glucuronosyltransferase 1 family, polypeptide A4 hs
HG-U133_PLUS_2:204532_X_AT UDP glucuronosyltransferase 1 family, polypeptide A4 hs
HG-U133A_2:204532_X_AT UDP glucuronosyltransferase 1 family, polypeptide A4 hs
U133_X3P:G13487899_3P_S_AT UDP glucuronosyltransferase 1 family, polypeptide A4 hs
U133_X3P:HS.2056.1.S1_3P_S_AT UDP glucuronosyltransferase 1 family, polypeptide A4 hs
HG-U95AV2:32392_S_AT UDP glucuronosyltransferase 1 family, polypeptide A4 hs
HG-U133_PLUS_2:208596_S_AT UDP glucuronosyltransferase 1 family, polypeptide A3 hs
HG-FOCUS:208596_S_AT UDP glucuronosyltransferase 1 family, polypeptide A3 hs
HG-U133A:208596_S_AT UDP glucuronosyltransferase 1 family, polypeptide A3 hs
HG-U133A_2:208596_S_AT UDP glucuronosyltransferase 1 family, polypeptide A3 hs
HG-U133_PLUS_2:207126_X_AT UDP glucuronosyltransferase 1 family, polypeptide A3 hs
HG-U133A:207126_X_AT UDP glucuronosyltransferase 1 family, polypeptide A3 hs
HG-FOCUS:207126_X_AT UDP glucuronosyltransferase 1 family, polypeptide A3 hs
HG-U133A_2:207126_X_AT UDP glucuronosyltransferase 1 family, polypeptide A3 hs
HG-U133_PLUS_2:215125_S_AT UDP glucuronosyltransferase 1 family, polypeptide A3 hs
HG-U133A_2:215125_S_AT UDP glucuronosyltransferase 1 family, polypeptide A3 hs
HG-FOCUS:215125_S_AT UDP glucuronosyltransferase 1 family, polypeptide A3 hs
HG-U133A:215125_S_AT UDP glucuronosyltransferase 1 family, polypeptide A3 hs
HU35KSUBC:RC_AA085987_S_AT UDP glucuronosyltransferase 1 family, polypeptide A3 hs
HUGENEFL:J04093_S_AT UDP glucuronosyltransferase 1 family, polypeptide A3 hs
HG-U133A:204532_X_AT UDP glucuronosyltransferase 1 family, polypeptide A3 hs
HG-U133_PLUS_2:204532_X_AT UDP glucuronosyltransferase 1 family, polypeptide A3 hs
HG-U133A_2:204532_X_AT UDP glucuronosyltransferase 1 family, polypeptide A3 hs
U133_X3P:G13487899_3P_S_AT UDP glucuronosyltransferase 1 family, polypeptide A3 hs
U133_X3P:HS.2056.1.S1_3P_S_AT UDP glucuronosyltransferase 1 family, polypeptide A3 hs
HG-U95AV2:32392_S_AT UDP glucuronosyltransferase 1 family, polypeptide A3 hs
Protein Similarities
Method ID Description E-Value
blast AAK52183 Udp-glucuronosyltransferase protein 48 [Caenorhabditis elegans] ref|NP_504464.2| C18C4.3 [Caenorhabditis elegans] 0.0
blast Q18081 Putative UDP-glucuronosyltransferase UGT15 precursor (UDPGT) 0.0
blast T34106 hypothetical protein C18C4.3 - Caenorhabditis elegans 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002213 EMBL-EBI UDP-glucoronosyl/UDP-glucosyl transferase 3.6E-10
Pfam IPR002213 EMBL-EBI UDP-glucoronosyl/UDP-glucosyl transferase 9.7E-23
Pfam IPR002213 EMBL-EBI UDP-glucoronosyl/UDP-glucosyl transferase 3.9E-11
Pfam IPR002213 EMBL-EBI UDP-glucoronosyl/UDP-glucosyl transferase 9.7E-23
Pfam IPR002213 EMBL-EBI UDP-glucoronosyl/UDP-glucosyl transferase 3.8E-8
Pfam IPR002213 EMBL-EBI UDP-glucoronosyl/UDP-glucosyl transferase 9.7E-23
Pfam IPR002213 EMBL-EBI UDP-glucoronosyl/UDP-glucosyl transferase 3.9E-11
Pfam IPR002213 EMBL-EBI UDP-glucoronosyl/UDP-glucosyl transferase 9.7E-23
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504464.2 1 487-509
C18C4.3 1 466-488
GENEFINDER00000035608 1 605-627
Sequence
Target Sequence 
>C. ELEGANS:189500_AT
gttttgatcttgctgagggactctcaaatgtcctcgtcgtggattgggttccccaaaccg
cagttcttgctcatccaagactgaaagcattcatcacacatgctggttacaacagtttga
tggaatctgcctatgcaggtgttccagttattcttattccatttatgtttgatcaaccaa
gaaatggacggtctgtcgagagaaaaggatggggaattctgagagataggttccagttga
ttaaagatccagatgcgattgagggagctatcaaggagattctcgttaatccaacaaact
tcaaaaataaaacaatcacctctaatttcattttcag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTTTGATCTTGCTGAGGGACTCTC 120 449 923 Antisense
GAGGGACTCTCAAATGTCCTCGTCG 603 401 937 Antisense
AATGTCCTCGTCGTGGATTGGGTTC 246 161 949 Antisense
CCGCAGTTCTTGCTCATCCAAGACT 568 261 980 Antisense
AAAGCATTCATCACACATGCTGGTT 609 123 1006 Antisense
AGTTTGATGGAATCTGCCTATGCAG 504 63 1036 Antisense
TCTGCCTATGCAGGTGTTCCAGTTA 676 603 1048 Antisense
GGTGTTCCAGTTATTCTTATTCCAT 197 501 1060 Antisense
AGTTATTCTTATTCCATTTATGTTT 385 63 1068 Antisense
AAATGGACGGTCTGTCGAGAGAAAA 157 117 1104 Antisense
CAATCACCTCTAATTTCATTTTCAG 557 181 1235 Antisense
Sequence Source Affymetrix Proprietary Database