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[189497_at] ABC transporters

Description Y49E10.9 /REP_DB=WormBase Gene ID /WP=CE22226 /TR=Q9XTU7 /GB=CAB11549.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=ABC transporters
Cluster 6grp_total > 85      4grp_total > 34      6grp_cgc > 68      6grp_cgc_sub > In      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 72
1 2 3 4 range
A 21.8
(-3)
A 		40
(-1.5)
A 		57.9
(0)
A 		93.7
(3)
P 		72
B 48.4
(-3)
A 		77.3
(3)
A 		68.5
(1.2)
P 		48.5
(-3)
A 		29
C 55.2
(-0.3)
A 		92.6
(3)
P 		24.1
(-3)
A 		33.4
(-2.2)
M 		69
avr 41.8
(-3) 		70
(3) 		50.2
(-1.2) 		58.5
(0.6) 		28

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 68
1 2 3 4 5 6 range
A 37.7
(-3)
A 		41.6
(-1.6)
A 		44.8
(-0.5)
P 		45.2
(-0.4)
M 		40.1
(-2.2)
A 		54.7
(3)
P 		17
B 47.6
(-3)
M 		49.2
(-2.6)
M 		49.5
(-2.6)
M 		50.4
(-2.4)
A 		67.9
(1.6)
P 		74.2
(3)
P 		27
C 38.3
(0.3)
A 		37.6
(0.2)
P 		5.9
(-3)
A 		65.7
(3)
P 		36.1
(0)
A 		52.4
(1.7)
P 		60
avr 41.2
(-1.3) 		42.8
(-0.9) 		33.4
(-3) 		53.8
(1.5) 		48
(0.2) 		60.4
(3) 		27
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 21
1 2 3 4 range
A 7.9
(-3)
A 		8.7
(-2.3)
A 		15.1
(3)
A 		13.7
(1.8)
P 		7
B 15.4
(0.5)
A 		19.1
(3)
A 		15.9
(0.8)
P 		10.3
(-3)
A 		9
C 18.3
(0.6)
A 		26.6
(3)
P 		8.4
(-2.2)
A 		5.6
(-3)
M 		21
avr 13.9
(-0.1) 		18.1
(3) 		13.1
(-0.7) 		9.9
(-3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 26
1 2 3 4 5 6 range
A 7
(-3)
A 		14.8
(3)
A 		9.8
(-0.8)
P 		11.5
(0.5)
M 		12.1
(0.9)
A 		13.3
(1.8)
P 		8
B 16.6
(-1.2)
M 		16.4
(-1.3)
M 		12
(-3)
M 		13.4
(-2.5)
A 		27.6
(3)
P 		27.7
(3)
P 		16
C 14.2
(1.7)
A 		11.5
(0.7)
P 		1.5
(-3)
A 		13.2
(1.4)
P 		11.7
(0.8)
A 		17.6
(3)
P 		16
avr 12.6
(-0.5) 		14.2
(0.3) 		7.8
(-3) 		12.7
(-0.5) 		17.1
(1.8) 		19.5
(3) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189497_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7018
Sequence Type Exemplar sequence
Representative Public ID Y49E10.9 NCBI
Target Description Y49E10.9 /REP_DB=WormBase Gene ID /WP=CE22226 /TR=Q9XTU7 /GB=CAB11549.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=ABC transporters
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067215(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067215 NCBI Caenorhabditis elegans Temporarily Assigned Gene name family member (tag-222) (tag-222) mRNA, complete cds. 11/11 None
GENEFINDER00000016109 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:12390965:12395229:-1 10/11 None
Y49E10.9 ENSEMBL cdna:known chromosome:CEL140:III:12390965:12395229:-1 gene:Y49E10.9 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_001028299 5/11 Cross Hyb Matching Probes None
SNAP00000016076 5/11 Cross Hyb Matching Probes None
SNAP00000016077 2/11 Cross Hyb Matching Probes None
SNAP00000016078 2/11 Cross Hyb Matching Probes None
SNAP00000031583 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:12390960-12395225(-) 100.0 100.0
Public Domain and Genome References
Gene Title ABC transporters
Gene Symbol tag-222
Ensembl Y49E10.9
Entrez Gene 190068 Entrez gene
SwissProt Q9XTU7 EMBL-EBI
WormBase CE22226 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6810 transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
166 nucleotide binding inferred from electronic annotation QuickGO AmiGO
5524 ATP binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB11549 Hypothetical protein Y49E10.9 [Caenorhabditis elegans] ref|NP_499616.1| Temporarily Assigned Gene name family member (tag-222) [Caenorhabditis elegans] 0.0
blast CAB11549 Hypothetical protein Y49E10.9 [Caenorhabditis elegans] ref|NP_499616.1| Temporarily Assigned Gene name family member (tag-222) [Caenorhabditis elegans] 1.0E-180
blast CAA93461 Hypothetical protein F19B6.4 [Caenorhabditis elegans] ref|NP_502352.1| F19B6.4 [Caenorhabditis elegans] 5.0E-74
blast CAE66487 Hypothetical protein CBG11767 [Caenorhabditis briggsae] 9.0E-72
blast CAA93461 Hypothetical protein F19B6.4 [Caenorhabditis elegans] ref|NP_502352.1| F19B6.4 [Caenorhabditis elegans] 2.0E-66
blast CAE66487 Hypothetical protein CBG11767 [Caenorhabditis briggsae] 2.0E-64
Protein Domains
Database ID Description E-Value
Pfam IPR003439 EMBL-EBI ABC transporter 4.1E-31
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_499616.1 3 336-358,365-387,428-450
Y49E10.9 3 336-358,365-387,428-450
GENEFINDER00000016109 3 413-435,442-464,505-527
Sequence
Target Sequence 
>C. ELEGANS:189497_AT
tgagccaacatctggcctggactcattcatgtctcatcaaggaaaagttgcatatgaggg
ttctacaaaggatgttgaagggtttttggtgaaattaggatctcctgtccctgaactcac
aagcgtcagtgatcatttcatacgagttttgtcgagatcaattgctcacgccgtcgtgtc
catctgtggggacatcactatgtcccttatggttgctccactgatttctgtgcctgttat
ggtttttggtggattcctgataactgtcgatgcggtcccagtgtactatcttccgttgac
ctacgtgtcatggtaccattatgcgtttgaagccattatgattgcattctttaaggatca
tggagatattaaaggctgcgataaacctgtcattacacaatttgaatgttcaaatggcct
aaaattcattagtgaccaggattttaaagtggagcatttttggttggatttcatcgcagt
cggtgcaattctcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGAGCCAACATCTGGCCTGGACTCA 703 567 825 Antisense
GCCTGGACTCATTCATGTCTCATCA 291 283 839 Antisense
AAATTAGGATCTCCTGTCCCTGAAC 137 117 916 Antisense
GTCCCTGAACTCACAAGCGTCAGTG 551 475 931 Antisense
TGTCGAGATCAATTGCTCACGCCGT 57 559 974 Antisense
TCACTATGTCCCTTATGGTTGCTCC 399 627 1019 Antisense
CTCCACTGATTTCTGTGCCTGTTAT 407 235 1040 Antisense
TCCTGATAACTGTCGATGCGGTCCC 124 593 1079 Antisense
TACTATCTTCCGTTGACCTACGTGT 673 607 1108 Antisense
GGCTGCGATAAACCTGTCATTACAC 107 541 1198 Antisense
TTCATCGCAGTCGGTGCAATTCTCC 359 689 1294 Antisense
Sequence Source Affymetrix Proprietary Database