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[189496_at] EGF-like protein

Description F47B3.8 /REP_DB=WormBase Gene ID /WP=CE10630 /TR=O01552 /GB=AAB52363.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation /DEF=EGF-like protein
Cluster 6grp_total > 02      4grp_total > 15      6grp_cgc > 43      6grp_cgc_sub > 02      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 60
1 2 3 4 range
A 50.9
(3)
A 		14.1
(-1.6)
A 		3.1
(-3)
A 		43.7
(2.1)
A 		48
B 63.5
(3)
A 		13.7
(-3)
A 		37.3
(-0.2)
A 		27.1
(-1.4)
A 		50
C 9.9
(-3)
A 		10.3
(-3)
A 		23.1
(-1.4)
A 		58.7
(3)
A 		49
avr 41.4
(2.6) 		12.7
(-3) 		21.2
(-1.3) 		43.2
(3) 		31

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 40
1 2 3 4 5 6 range
A 7.8
(-2.3)
A 		40.9
(3)
A 		4.6
(-2.8)
A 		3.2
(-3)
A 		4.1
(-2.9)
A 		11.9
(-1.6)
A 		38
B 9.8
(3)
A 		2
(-2.5)
A 		1.3
(-3)
A 		3.7
(-1.3)
A 		1.6
(-2.8)
A 		2.9
(-1.9)
A 		9
C 17.8
(3)
A 		16
(2.3)
A 		7.4
(-0.8)
A 		8.8
(-0.3)
A 		2.2
(-2.6)
A 		1.2
(-3)
A 		17
avr 11.8
(0.2) 		19.6
(3) 		4.4
(-2.4) 		5.2
(-2.1) 		2.6
(-3) 		5.3
(-2) 		17
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 18.5
(3)
A 		3.1
(-2.2)
A 		0.8
(-3)
A 		6.4
(-1.1)
A 		18
B 20.3
(3)
A 		3.4
(-3)
A 		8.6
(-1.2)
A 		5.8
(-2.1)
A 		17
C 3.3
(-2.7)
A 		3
(-3)
A 		8.1
(1.4)
A 		9.9
(3)
A 		7
avr 14
(3) 		3.2
(-3) 		5.8
(-1.6) 		7.4
(-0.7) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 1.4
(-2.7)
A 		14.6
(3)
A 		1
(-2.9)
A 		0.8
(-3)
A 		1.2
(-2.8)
A 		2.9
(-2.1)
A 		14
B 3.4
(3)
A 		0.7
(-2.2)
A 		0.3
(-3)
A 		1
(-1.6)
A 		0.7
(-2.2)
A 		1.1
(-1.5)
A 		3
C 6.6
(3)
A 		4.9
(1.4)
A 		1.9
(-1.5)
A 		1.8
(-1.6)
A 		0.7
(-2.7)
A 		0.4
(-3)
A 		6
avr 3.8
(0) 		6.7
(3) 		1.1
(-2.8) 		1.2
(-2.7) 		0.9
(-3) 		1.5
(-2.4) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189496_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.174
Sequence Type Exemplar sequence
Representative Public ID F47B3.8 NCBI
Target Description F47B3.8 /REP_DB=WormBase Gene ID /WP=CE10630 /TR=O01552 /GB=AAB52363.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation /DEF=EGF-like protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058870(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058870 NCBI Caenorhabditis elegans Temporarily Assigned Gene name family member (tag-162) (tag-162) mRNA, complete cds. 11/11 None
GENEFINDER00000030474 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:3943779:3954943:-1 11/11 None
SNAP00000030463 ENSEMBL cdna:SNAP chromosome:CEL140:I:3943945:3953944:-1 11/11 None
F47B3.8 ENSEMBL cdna:known chromosome:CEL140:I:3943945:3953944:-1 gene:F47B3.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:3943944-3953944(-) 100.0 100.0
Public Domain and Genome References
Gene Title EGF-like protein
Gene Symbol tag-162
Ensembl F47B3.8
Entrez Gene 185889 Entrez gene
SwissProt O01552 EMBL-EBI
WormBase CE10630 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB52363 Temporarily assigned gene name protein 162 [Caenorhabditis elegans] ref|NP_491271.1| Temporarily Assigned Gene name family member (tag-162) [Caenorhabditis elegans] 0.0
blast CAE66705 Hypothetical protein CBG12050 [Caenorhabditis briggsae] 0.0
blast NP_990573 low density lipoprotein-related protein 1 [Gallus gallus] emb|CAA52870.1| alpha-2-macroglobulin receptor [Gallus gallus] sp|P98157|LRP1_CHICK Low-density lipoprotein receptor-related protein 1 precursor (LRP) (Alpha-2-macroglobulin receptor) (A2MR) 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR006209 EMBL-EBI EGF-like domain 6.1E-5
Pfam IPR002172 EMBL-EBI Low density lipoprotein-receptor, class A 9.6E-8
Pfam IPR002172 EMBL-EBI Low density lipoprotein-receptor, class A 2.1E-11
Pfam IPR002172 EMBL-EBI Low density lipoprotein-receptor, class A 2.3E-11
Pfam IPR002172 EMBL-EBI Low density lipoprotein-receptor, class A 1.3E-10
Pfam IPR002172 EMBL-EBI Low density lipoprotein-receptor, class A 9.3E-11
Pfam IPR002172 EMBL-EBI Low density lipoprotein-receptor, class A 9.0E-14
Pfam IPR002172 EMBL-EBI Low density lipoprotein-receptor, class A 6.5E-14
Pfam IPR002172 EMBL-EBI Low density lipoprotein-receptor, class A 1.5E-9
Pfam IPR002172 EMBL-EBI Low density lipoprotein-receptor, class A 2.4E-13
Pfam IPR002172 EMBL-EBI Low density lipoprotein-receptor, class A 2.4E-10
Pfam IPR002172 EMBL-EBI Low density lipoprotein-receptor, class A 7.8E-5
Pfam IPR000033 EMBL-EBI Low-density lipoprotein receptor, YWTD repeat 1.9E-5
Pfam IPR000033 EMBL-EBI Low-density lipoprotein receptor, YWTD repeat 3.4E-6
Pfam IPR000033 EMBL-EBI Low-density lipoprotein receptor, YWTD repeat 6.4E-5
Pfam IPR000033 EMBL-EBI Low-density lipoprotein receptor, YWTD repeat 1.3E-5
Pfam IPR000033 EMBL-EBI Low-density lipoprotein receptor, YWTD repeat 6.7E-10
Pfam IPR000033 EMBL-EBI Low-density lipoprotein receptor, YWTD repeat 5.7E-9
Pfam IPR000033 EMBL-EBI Low-density lipoprotein receptor, YWTD repeat 7.9E-5
Pfam IPR006209 EMBL-EBI EGF-like domain 6.1E-5
Pfam IPR002172 EMBL-EBI Low density lipoprotein-receptor, class A 9.6E-8
Pfam IPR002172 EMBL-EBI Low density lipoprotein-receptor, class A 2.1E-11
Pfam IPR002172 EMBL-EBI Low density lipoprotein-receptor, class A 2.3E-11
Pfam IPR002172 EMBL-EBI Low density lipoprotein-receptor, class A 1.3E-10
Pfam IPR002172 EMBL-EBI Low density lipoprotein-receptor, class A 9.3E-11
Pfam IPR002172 EMBL-EBI Low density lipoprotein-receptor, class A 9.0E-14
Pfam IPR002172 EMBL-EBI Low density lipoprotein-receptor, class A 6.5E-14
Pfam IPR002172 EMBL-EBI Low density lipoprotein-receptor, class A 1.5E-9
Pfam IPR002172 EMBL-EBI Low density lipoprotein-receptor, class A 2.4E-13
Pfam IPR002172 EMBL-EBI Low density lipoprotein-receptor, class A 2.4E-10
Pfam IPR002172 EMBL-EBI Low density lipoprotein-receptor, class A 7.8E-5
Pfam IPR000033 EMBL-EBI Low-density lipoprotein receptor, YWTD repeat 1.9E-5
Pfam IPR000033 EMBL-EBI Low-density lipoprotein receptor, YWTD repeat 3.4E-6
Pfam IPR000033 EMBL-EBI Low-density lipoprotein receptor, YWTD repeat 6.4E-5
Pfam IPR000033 EMBL-EBI Low-density lipoprotein receptor, YWTD repeat 1.3E-5
Pfam IPR000033 EMBL-EBI Low-density lipoprotein receptor, YWTD repeat 6.7E-10
Pfam IPR000033 EMBL-EBI Low-density lipoprotein receptor, YWTD repeat 5.7E-9
Pfam IPR000033 EMBL-EBI Low-density lipoprotein receptor, YWTD repeat 7.9E-5
Sequence
Target Sequence 
>C. ELEGANS:189496_AT
gacacattgcaattcatccatgccgaatgttgctctttttcaccaataatgcaattactg
gatccgttattgaacgggtctatttcagcgggtttaagagggatcaaattgtacaagaag
atcttcatgacctacgaggactaaccattgatctcgattccgaaaaactttacttctcag
actctaaggatttcaaaatctcgcgttgcgactttgatggatctcatagagagctcgtcg
tctcaaacaccgacattccttcaatacatccattcgaactatccatctatgatgatgaga
tcatatttacggattgggttagaagatcagtagttggagtgaataagattactggttctg
ataatagaaatattaatcgagcaactgatgttccagttggattagttgtagtggacacta
agagagaatattgcacctcggatgcatgcgccgacaatgagctgaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACACATTGCAATTCATCCATGCCG 520 365 7346 Antisense
ATCCATGCCGAATGTTGCTCTTTTT 102 41 7361 Antisense
TGAACGGGTCTATTTCAGCGGGTTT 261 571 7416 Antisense
GAAGATCTTCATGACCTACGAGGAC 47 339 7462 Antisense
GACTAACCATTGATCTCGATTCCGA 289 371 7484 Antisense
GGATTTCAAAATCTCGCGTTGCGAC 419 509 7533 Antisense
AGCTCGTCGTCTCAAACACCGACAT 498 59 7577 Antisense
CGACATTCCTTCAATACATCCATTC 83 253 7596 Antisense
ACATCCATTCGAACTATCCATCTAT 325 107 7611 Antisense
AATATTGCACCTCGGATGCATGCGC 311 173 7772 Antisense
ATGCATGCGCCGACAATGAGCTGAA 657 43 7787 Antisense
Sequence Source Affymetrix Proprietary Database