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[189490_at] carboxylesterase

Description ZK994.1 /REP_DB=WormBase Gene ID /WP=CE15485 /TR=O44089 /GB=AAB88609.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=carboxylesterase
Cluster 6grp_total > 18      4grp_total > 01      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 1.4
(-3)
A 		1.7
(-2.5)
A 		2.3
(-1.5)
A 		5.1
(3)
A 		4
B 1.3
(-3)
A 		2.4
(-0.7)
A 		4.2
(3)
A 		4
(2.6)
A 		3
C 5
(-1.8)
A 		2.5
(-3)
A 		2.6
(-3)
A 		15.3
(3)
A 		13
avr 2.6
(-2.6) 		2.2
(-3) 		3
(-2.2) 		8.1
(3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 57
1 2 3 4 5 6 range
A 57.7
(3)
A 		1.2
(-3)
A 		4.5
(-2.6)
A 		5.6
(-2.5)
A 		6
(-2.5)
A 		0.8
(-3)
A 		57
B 4.4
(3)
A 		2.4
(-1.3)
A 		3.9
(1.9)
A 		1.6
(-3)
A 		2.9
(-0.2)
A 		1.6
(-3)
A 		3
C 1
(-2.8)
A 		15.5
(3)
A 		3
(-2)
A 		3.1
(-2)
A 		0.6
(-3)
A 		2.7
(-2.2)
A 		15
avr 21
(3) 		6.4
(-1.5) 		3.8
(-2.3) 		3.4
(-2.5) 		3.2
(-2.5) 		1.7
(-3) 		19
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2
1 2 3 4 range
A 0.5
(-1)
A 		0.4
(-3)
A 		0.6
(1)
A 		0.7
(3)
A 		0
B 0.4
(-3)
A 		0.6
(-1)
A 		1
(3)
A 		0.9
(2)
A 		1
C 1.7
(0.2)
A 		0.7
(-3)
A 		0.9
(-2.4)
A 		2.6
(3)
A 		2
avr 0.9
(-0.8) 		0.6
(-3) 		0.8
(-1.5) 		1.4
(3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 10.6
(3)
A 		0.4
(-2.9)
A 		1
(-2.5)
A 		1.4
(-2.3)
A 		1.8
(-2.1)
A 		0.2
(-3)
A 		10
B 1.5
(3)
A 		0.8
(-0.8)
A 		0.9
(-0.3)
A 		0.4
(-3)
A 		1.2
(1.4)
A 		0.6
(-1.9)
A 		1
C 0.4
(-2.7)
A 		4.7
(3)
A 		0.8
(-2.2)
A 		0.6
(-2.5)
A 		0.2
(-3)
A 		0.9
(-2.1)
A 		5
avr 4.2
(3) 		2
(-0.7) 		0.9
(-2.5) 		0.8
(-2.7) 		1.1
(-2.2) 		0.6
(-3) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189490_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12199
Sequence Type Exemplar sequence
Representative Public ID ZK994.1 NCBI
Target Description ZK994.1 /REP_DB=WormBase Gene ID /WP=CE15485 /TR=O44089 /GB=AAB88609.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=carboxylesterase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072789(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072789 NCBI Caenorhabditis elegans ZK994.1 (carboxylesterase) mRNA, complete cds. 11/11 None
SNAP00000030764 ENSEMBL cdna:SNAP chromosome:CEL140:V:8513716:8515151:1 9/11 None
ZK994.1 ENSEMBL cdna:known chromosome:CEL140:V:8512826:8515252:1 gene:ZK994.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000030787 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:8512826-8515253(+) 100.0 100.0
Public Domain and Genome References
Gene Title carboxylesterase
Ensembl ZK994.1
Entrez Gene 191483 Entrez gene
SwissProt O44089 EMBL-EBI
WormBase CE15485 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB88609 Hypothetical protein ZK994.1 [Caenorhabditis elegans] ref|NP_505190.1| ZK994.1 [Caenorhabditis elegans] 0.0
blast CAB00884 Hypothetical protein ZC376.2 [Caenorhabditis elegans] ref|NP_506509.3| ZC376.2 [Caenorhabditis elegans] 3.0E-77
blast CAE61007 Hypothetical protein CBG04745 [Caenorhabditis briggsae] 4.0E-76
blast CAB00884 Hypothetical protein ZC376.2 [Caenorhabditis elegans] ref|NP_506509.3| ZC376.2 [Caenorhabditis elegans] 6.0E-40
blast CAB03272 Hypothetical protein T02B5.1 [Caenorhabditis elegans] ref|NP_506506.1| T02B5.1 [Caenorhabditis elegans] 2.0E-37
Protein Domains
Database ID Description E-Value
Pfam IPR002018 EMBL-EBI Carboxylesterase, type B 4.2E-102
Pfam IPR002018 EMBL-EBI Carboxylesterase, type B 6.4E-54
Sequence
Target Sequence 
>C. ELEGANS:189490_AT
gaattatttggttttgtgggagcttatgaaaaaccgtatggttttgttgaacaatgtgtt
gaattttatatgaaaaactccacaacagcgacttttcttgatgattatatattccatgtt
ccaacttcgtatctagcaagaaaacattcttctgaaaagccggtatatttatttgtgaat
tatggtgcaccatatggagatgaatggagcaaattgaatcccaaaattatgaaatattac
gatatagattttaatgataaatatgaaatggctgggatgagatatggatttcatgaaaaa
tcattcgaattctgggacgatacggcaaaagaatatggtggagtttttacttttagtaat
gatcaacctaaatcattcgacacgttccctgtctgggagtttgccaaattgaagaattat
gtcaaaactggaagtggtgctcacaaaattccgaaggaaattgaaaagtttatagctcat
aagaaaaacgaatacgacgtacgcatgaagaattcaatatacctacaaaagattcaaatg
gatccatctgttattcctgtc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAATTATTTGGTTTTGTGGGAGCTT 605 323 1087 Antisense
AACTCCACAACAGCGACTTTTCTTG 659 141 1162 Antisense
GATTATATATTCCATGTTCCAACTT 438 429 1189 Antisense
CCATGTTCCAACTTCGTATCTAGCA 266 271 1200 Antisense
AACATTCTTCTGAAAAGCCGGTATA 369 137 1229 Antisense
GAATTCTGGGACGATACGGCAAAAG 704 321 1393 Antisense
CCTAAATCATTCGACACGTTCCCTG 660 265 1453 Antisense
ACGTTCCCTGTCTGGGAGTTTGCCA 136 93 1468 Antisense
AGTGGTGCTCACAAAATTCCGAAGG 530 57 1519 Antisense
GAATACGACGTACGCATGAAGAATT 367 327 1576 Antisense
AATGGATCCATCTGTTATTCCTGTC 171 163 1623 Antisense
Sequence Source Affymetrix Proprietary Database