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[189489_at] human tenascin-X

Description R08E3.2 /REP_DB=WormBase Gene ID /WP=CE04823 /TR=Q21849 /GB=AAC48195.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=human tenascin-X
Cluster 6grp_high1_10_10 > 42      6grp_total > 31      4grp_total > 59      6grp_high1_sub > 02_03      6grp_total_sub > Hat      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 181
1 2 3 4 range
A 191.2
(-1.3)
P 		252.8
(3)
P 		207.9
(-0.1)
P 		166.7
(-3)
A 		86
B 251
(3)
P 		179.7
(0.1)
P 		234.8
(2.4)
P 		101.3
(-3)
A 		150
C 165.6
(-1.6)
P 		282.1
(3)
P 		223.5
(0.7)
P 		129.1
(-3)
A 		153
avr 202.6
(1) 		238.2
(3) 		222.1
(2.1) 		132.4
(-3) 		106

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 168
1 2 3 4 5 6 range
A 189.9
(2.2)
A 		175.7
(1.6)
P 		208.9
(3)
P 		186.9
(2.1)
P 		111.6
(-1.1)
A 		65.4
(-3)
A 		144
B 156.4
(1.4)
M 		174.7
(2.6)
P 		174.6
(2.6)
P 		180
(3)
P 		97.1
(-2.5)
P 		90
(-3)
M 		90
C 126.8
(-0.9)
P 		232.9
(3)
P 		188.8
(1.4)
P 		220.1
(2.5)
P 		108
(-1.6)
M 		71.5
(-3)
P 		161
avr 157.7
(1.1) 		194.4
(2.9) 		190.8
(2.8) 		195.7
(3) 		105.6
(-1.5) 		75.6
(-3) 		120
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 60
1 2 3 4 range
A 69.6
(3)
P 		54.9
(1)
P 		54.3
(1)
P 		24.4
(-3)
A 		45
B 80.1
(3)
P 		44.4
(-0.7)
P 		54.4
(0.4)
P 		21.6
(-3)
A 		59
C 54.8
(0.3)
P 		81.1
(3)
P 		77.9
(2.7)
P 		21.8
(-3)
A 		59
avr 68.2
(3) 		60.1
(1.9) 		62.2
(2.2) 		22.6
(-3) 		46

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 55
1 2 3 4 5 6 range
A 35
(-0.5)
A 		62.5
(3)
P 		45.5
(0.8)
P 		47.4
(1.1)
P 		33.7
(-0.7)
A 		15.9
(-3)
A 		47
B 54.4
(2.1)
M 		58.1
(3)
P 		42.4
(-0.8)
P 		47.7
(0.5)
P 		39.4
(-1.6)
P 		33.6
(-3)
M 		25
C 47
(-0.1)
P 		71.1
(3)
P 		48.1
(0.1)
P 		44.3
(-0.4)
P 		34.9
(-1.6)
M 		23.9
(-3)
P 		47
avr 45.5
(0.2) 		63.9
(3) 		45.3
(0.2) 		46.5
(0.4) 		36
(-1.2) 		24.5
(-3) 		39
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189489_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16580
Sequence Type Exemplar sequence
Representative Public ID R08E3.2 NCBI
Target Description R08E3.2 /REP_DB=WormBase Gene ID /WP=CE04823 /TR=Q21849 /GB=AAC48195.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=human tenascin-X
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076422(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076422 NCBI Caenorhabditis elegans R08E3.2 (R08E3.2) mRNA, complete cds. 11/11 None
SNAP00000006864 ENSEMBL cdna:SNAP chromosome:CEL140:X:4822630:4834753:1 11/11 None
GENEFINDER00000006867 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:4822630:4834753:1 11/11 None
R08E3.2 ENSEMBL cdna:known chromosome:CEL140:X:4821795:4824648:1 gene:R08E3.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:4821795-4824649(+) 97.04 100.0
Public Domain and Genome References
Gene Title human tenascin-X
Ensembl R08E3.2
Entrez Gene 187701 Entrez gene
SwissProt Q21849 EMBL-EBI
WormBase CE04823 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC48194 Hypothetical protein R08E3.1a [Caenorhabditis elegans] ref|NP_001024846.1| R08E3.1a [Caenorhabditis elegans] 0.0
blast AAP46276 Hypothetical protein R08E3.1b [Caenorhabditis elegans] ref|NP_001024847.1| R08E3.1b [Caenorhabditis elegans] 0.0
blast CAE68720 Hypothetical protein CBG14646 [Caenorhabditis briggsae] 0.0
blast AAC48195 Hypothetical protein R08E3.2 [Caenorhabditis elegans] ref|NP_508823.1| R08E3.2 [Caenorhabditis elegans] 1.0E-179
blast CAE57110 Hypothetical protein CBG25015 [Caenorhabditis briggsae] 7.0E-53
Sequence
Target Sequence 
>C. ELEGANS:189489_AT
gattcgacggccaatcattctcaagcaataaagtcgatcggtgcatttgccctccagggt
ttttaggtcgcaattgcgagccagtgaaatgtgttcctggttcaaatcaagcgtactcct
catcaaatagtgaaaaatcaataagtcttctagcctcatttaatacgaaaatggcagaaa
catggcaaactggaaatatcggaaaccttttttgcgaaaaagaaggttattggagaagtt
ttaactacaactacgataacgcaggctatacatcgtcaccatctgaaaatactactactt
gtactgaaaaagttcaagattatttgaccccagacccgtgccaaaatgattacggaaatg
caactacttgtggacagctcgatattaacaatcttaattctcttgttcaaaactctcccc
caaattcaatagtaagttctacattgaaattcgaattttcaattaatacctcactagata
gcgttaaaaacttacctgtcgataattctttggatttatttgtagctgctcaaacaaact
atggtcaagacttaacattcaatacaaacagtgctccagtgattcgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATTCGACGGCCAATCATTCTCAAG 316 433 341 Antisense
ATAAAGTCGATCGGTGCATTTGCCC 202 25 368 Antisense
TGCCCTCCAGGGTTTTTAGGTCGCA 425 567 388 Antisense
TGTGTTCCTGGTTCAAATCAAGCGT 707 551 430 Antisense
AATCAAGCGTACTCCTCATCAAATA 243 171 445 Antisense
AAGTCTTCTAGCCTCATTTAATACG 381 155 483 Antisense
AACGCAGGCTATACATCGTCACCAT 498 145 598 Antisense
TCAAGATTATTTGACCCCAGACCCG 165 629 654 Antisense
CCCAGACCCGTGCCAAAATGATTAC 680 257 669 Antisense
GCAACTACTTGTGGACAGCTCGATA 628 319 700 Antisense
TACAAACAGTGCTCCAGTGATTCGT 633 641 903 Antisense
Sequence Source Affymetrix Proprietary Database