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[189487_at] protein kinase

Description Y69F12A.1 /REP_DB=WormBase Gene ID /WP=CE24572 /TR=Q9N4Q0 /GB=AAF60861.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation /DEF=protein kinase
Cluster 6grp_total > 97      4grp_total > 32      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 46
1 2 3 4 range
A 12.6
(-2)
A 		7.3
(-2.7)
A 		50.7
(3)
A 		5.4
(-3)
A 		45
B 24.7
(2.6)
A 		4.3
(-3)
A 		18.1
(0.8)
A 		26.3
(3)
A 		22
C 27
(-0.8)
A 		36.8
(1.2)
A 		16.1
(-3)
A 		45.5
(3)
A 		29
avr 21.4
(-0.4) 		16.1
(-3) 		28.3
(3) 		25.7
(1.7) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 51
1 2 3 4 5 6 range
A 9.4
(-2)
A 		11.7
(-1.7)
A 		5.8
(-2.5)
A 		2.2
(-3)
A 		44.8
(2.8)
A 		46.3
(3)
A 		44
B 11.8
(-1.6)
A 		14.3
(-1.2)
A 		4.1
(-3)
A 		16.1
(-0.9)
A 		29
(1.4)
A 		37.9
(3)
P 		34
C 4.5
(-3)
A 		18.2
(-1.3)
A 		18.8
(-1.3)
A 		31.8
(0.3)
A 		21.5
(-0.9)
A 		53.6
(3)
P 		49
avr 8.6
(-3) 		14.7
(-2) 		9.6
(-2.8) 		16.7
(-1.7) 		31.8
(0.7) 		45.9
(3) 		37
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 4.6
(-1.2)
A 		1.6
(-2.6)
A 		13.3
(3)
A 		0.8
(-3)
A 		13
B 7.9
(3)
A 		1.1
(-3)
A 		4.2
(-0.3)
A 		5.6
(1)
A 		7
C 8.9
(1)
A 		10.6
(3)
A 		5.6
(-3)
A 		7.7
(-0.5)
A 		5
avr 7.1
(1.9) 		4.4
(-3) 		7.7
(3) 		4.7
(-2.5) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 1.7
(-2.4)
A 		4.2
(-1.3)
A 		1.3
(-2.6)
A 		0.5
(-3)
A 		13.5
(3)
A 		11.3
(2)
A 		13
B 4.1
(-1.6)
A 		4.8
(-1.3)
A 		1
(-3)
A 		4.3
(-1.5)
A 		11.8
(1.9)
A 		14.1
(3)
P 		13
C 1.7
(-3)
A 		5.5
(-1.6)
A 		4.8
(-1.9)
A 		6.4
(-1.3)
A 		6.9
(-1.1)
A 		18
(3)
P 		16
avr 2.5
(-3) 		4.8
(-1.8) 		2.4
(-3) 		3.7
(-2.4) 		10.7
(1.1) 		14.5
(3) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189487_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7777
Sequence Type Exemplar sequence
Representative Public ID Y69F12A.1 NCBI
Target Description Y69F12A.1 /REP_DB=WormBase Gene ID /WP=CE24572 /TR=Q9N4Q0 /GB=AAF60861.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation /DEF=protein kinase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066238(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066238 NCBI Caenorhabditis elegans Y69F12A.1 (Y69F12A.1) mRNA, complete cds. 11/11 None
SNAP00000038084 ENSEMBL cdna:SNAP chromosome:CEL140:III:7454009:7458441:1 11/11 None
GENEFINDER00000038087 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:7456869:7458441:1 11/11 None
Y69F12A.1 ENSEMBL cdna:known chromosome:CEL140:III:7456869:7458441:1 gene:Y69F12A.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:7456866-7458439(+) 94.52 100.0
Public Domain and Genome References
Gene Title protein kinase
Ensembl Y69F12A.1
Entrez Gene 190555 Entrez gene
SwissProt Q9N4Q0 EMBL-EBI
WormBase CE24572 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6468 protein amino acid phosphorylation inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4672 protein kinase activity inferred from electronic annotation QuickGO AmiGO
4674 protein serine/threonine kinase activity inferred from electronic annotation QuickGO AmiGO
4713 protein-tyrosine kinase activity inferred from electronic annotation QuickGO AmiGO
5524 ATP binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAF60861 Hypothetical protein Y69F12A.1 [Caenorhabditis elegans] ref|NP_498639.1| Y69F12A.1 [Caenorhabditis elegans] 0.0
blast AAP46268 Aldehyde dehydrogenase protein 12, isoform a [Caenorhabditis elegans] ref|NP_001022930.1| ALdehyde deHydrogenase family member (alh-12) [Caenorhabditis elegans] 0.0
blast CAE64471 Hypothetical protein CBG09190 [Caenorhabditis briggsae] 0.0
blast AAP46269 Aldehyde dehydrogenase protein 12, isoform b [Caenorhabditis elegans] ref|NP_001022931.1| ALdehyde deHydrogenase family member (alh-12) [Caenorhabditis elegans] 0.0
blast CAE64470 Hypothetical protein CBG09188 [Caenorhabditis briggsae] 1.0E-148
blast CAE64351 Hypothetical protein CBG09038 [Caenorhabditis briggsae] 4.0E-73
Protein Domains
Database ID Description E-Value
Pfam IPR000719 EMBL-EBI Protein kinase 2.0E-16
Pfam IPR000719 EMBL-EBI Protein kinase 2.0E-16
Pfam IPR002086 EMBL-EBI Aldehyde dehydrogenase 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:189487_AT
gctgagcagactttggctggtttgagagatttgcacagggttggattcttgcatcgagat
atcaaacctccgaactttgcaatcggaagagaggaagatgatacctaccatacagtcttt
ctcttggatttcggactttgtagaaagattgccatgaagggaaaggacttgagaactcca
agaaaggaatgtgcattccgtggaactacaagatatgcagcgttagcagctcatgataat
aaagaacaatctcgcaaagatgatattgagtcgtggtggtacatgattgctgaaatgatt
gtattcgacattccatggaagcaatttcgtggaactgatcgtgataatgtccgtggaatg
aaatggcgacttcgcgcggatgagacctacttcaagtttttattccgcaaatgttgctac
gaacaaatgagtgccattcttctatacctcgatcaactatcgtattcaagtattcccgat
tatgattttgtttatcatcatcttcaagctgcagccattgttaacaattgttctgctaaa
tcgcctcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCTGAGCAGACTTTGGCTGGTTTGA 173 297 532 Antisense
ATCAAACCTCCGAACTTTGCAATCG 14 27 592 Antisense
TGATACCTACCATACAGTCTTTCTC 482 563 630 Antisense
TACAGTCTTTCTCTTGGATTTCGGA 62 643 642 Antisense
GATATGCAGCGTTAGCAGCTCATGA 609 423 743 Antisense
GAGTCGTGGTGGTACATGATTGCTG 581 399 799 Antisense
GAAATGGCGACTTCGCGCGGATGAG 366 359 891 Antisense
GCGGATGAGACCTACTTCAAGTTTT 230 293 907 Antisense
CATTCTTCTATACCTCGATCAACTA 156 217 966 Antisense
ATCATCTTCAAGCTGCAGCCATTGT 34 31 1028 Antisense
ACAATTGTTCTGCTAAATCGCCTCC 253 113 1055 Antisense
Sequence Source Affymetrix Proprietary Database