[Home] | [Total List]

[189485_at] cytochrome P450

Description B0213.14 /REP_DB=WormBase Gene ID /WP=CE16784 /TR=O44658 /GB=AAC47938.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=cytochrome P450
Cluster 6grp_highest_10_10 > 18      6grp_high1_10_10 > 71      4grp_highest_8_8 > 06      4grp_high_8_8 > 22      6grp_highest_nonorm > 71      6grp_total > 72      4grp_total > 17      6grp_highest_sub > 04_05      6grp_cgc > 84      6grp_high1_sub > 04      6grp_cgc_sub > 04      6grp_total_sub > Hat      6grp_rule_based > S4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 181
1 2 3 4 range
A 152.1
(-3)
P 		236.2
(0.7)
P 		221.5
(0)
P 		288.8
(3)
P 		137
B 211.3
(-2.7)
P 		227
(-2)
P 		205
(-3)
P 		333.1
(3)
P 		128
C 180.5
(-3)
P 		247.8
(0.6)
P 		237.5
(0)
P 		293.7
(3)
P 		113
avr 181.3
(-3) 		237
(-0.3) 		221.3
(-1.1) 		305.2
(3) 		124

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 299
1 2 3 4 5 6 range
A 245.5
(-1.3)
P 		271.7
(-0.6)
P 		423.6
(3)
P 		346.1
(1.1)
P 		332.1
(0.8)
P 		172.4
(-3)
P 		251
B 185.1
(-1.9)
P 		272.6
(0.5)
P 		330.8
(2)
P 		367.1
(3)
P 		323.1
(1.8)
P 		142.7
(-3)
P 		224
C 206.3
(-2)
P 		249.9
(-1.1)
P 		324.2
(0.5)
P 		442
(3)
P 		409.7
(2.3)
P 		161.7
(-3)
P 		280
avr 212.3
(-1.6) 		264.7
(-0.2) 		359.5
(2.3) 		385.1
(3) 		355
(2.2) 		158.9
(-3) 		226
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 41
1 2 3 4 range
A 55.4
(2)
P 		51.3
(0.5)
P 		57.9
(3)
P 		42.3
(-3)
P 		16
B 67.4
(2.1)
P 		56.1
(-0.8)
P 		47.5
(-3)
P 		71
(3)
P 		24
C 59.8
(-1.1)
P 		71.2
(0.9)
P 		82.8
(3)
P 		49.5
(-3)
P 		33
avr 60.9
(1.7) 		59.5
(0.7) 		62.7
(3) 		54.3
(-3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 91
1 2 3 4 5 6 range
A 45.3
(-2.7)
P 		96.6
(2.6)
P 		92.2
(2.2)
P 		87.8
(1.7)
P 		100.2
(3)
P 		42
(-3)
P 		58
B 64.4
(-2.1)
P 		90.7
(-0.1)
P 		80.3
(-0.9)
P 		97.2
(0.4)
P 		131.3
(3)
P 		53.2
(-3)
P 		78
C 76.5
(-1.3)
P 		76.2
(-1.3)
P 		82.5
(-0.8)
P 		88.9
(-0.3)
P 		132.6
(3)
P 		54.1
(-3)
P 		79
avr 62.1
(-2) 		87.8
(0.2) 		85
(-0.1) 		91.3
(0.5) 		121.4
(3) 		49.8
(-3) 		72
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189485_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15878
Sequence Type Exemplar sequence
Representative Public ID B0213.14 NCBI
Target Description B0213.14 /REP_DB=WormBase Gene ID /WP=CE16784 /TR=O44658 /GB=AAC47938.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=cytochrome P450
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071701(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071701 NCBI Caenorhabditis elegans CYtochrome P450 family member (cyp-34A8) (cyp-34A8) mRNA, complete cds. 11/11 None
SNAP00000025853 ENSEMBL cdna:SNAP chromosome:CEL140:V:3964680:3967622:-1 11/11 None
GENEFINDER00000025874 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:3964680:3970297:-1 11/11 None
B0213.14 ENSEMBL cdna:known chromosome:CEL140:V:3964592:3967684:-1 gene:B0213.14 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:3964679-3967622(-) 100.0 100.0
Public Domain and Genome References
Gene Title cytochrome P450
Gene Symbol cyp-34A8
Ensembl B0213.14
Entrez Gene 181850 Entrez gene
SwissProt O44658 EMBL-EBI
WormBase CE16784 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CHICKEN:GGAAFFX.21843.2.S1_AT cytochrome P450, family 2, subfamily C, polypeptide 18 gga
CHICKEN:GGAAFFX.21843.2.S1_S_AT cytochrome P450, family 2, subfamily C, polypeptide 18 gga
HG-U95AV2:1477_S_AT cytochrome P450, family 2, subfamily C, polypeptide 18 hs
HC-G110:1477_S_AT cytochrome P450, family 2, subfamily C, polypeptide 18 hs
HG-U133A:208126_S_AT cytochrome P450, family 2, subfamily C, polypeptide 18 hs
HG-U133_PLUS_2:208126_S_AT cytochrome P450, family 2, subfamily C, polypeptide 18 hs
HG-FOCUS:208126_S_AT cytochrome P450, family 2, subfamily C, polypeptide 18 hs
HG-U133A_2:208126_S_AT cytochrome P450, family 2, subfamily C, polypeptide 18 hs
HUGENEFL:M61853_AT cytochrome P450, family 2, subfamily C, polypeptide 18 hs
U133_X3P:G13699815_3P_S_AT cytochrome P450, family 2, subfamily C, polypeptide 18 hs
U133_X3P:HS.702.0.S1_3P_AT cytochrome P450, family 2, subfamily C, polypeptide 18 hs
HG-U133A_2:215103_AT cytochrome P450, family 2, subfamily C, polypeptide 18 hs
HG-U133_PLUS_2:215103_AT cytochrome P450, family 2, subfamily C, polypeptide 18 hs
HG-U133A:215103_AT cytochrome P450, family 2, subfamily C, polypeptide 18 hs
MOUSE430_2:1419582_AT cytochrome P450, family 2, subfamily c, polypeptide 55 mm
MOE430A:1419582_AT cytochrome P450, family 2, subfamily c, polypeptide 55 mm
MOUSE430A_2:1419582_AT cytochrome P450, family 2, subfamily c, polypeptide 55 mm
MG-U74CV2:134079_F_AT cytochrome P450, family 2, subfamily c, polypeptide 55 mm
RT-U34:X79081MRNA_F_AT Cytochrome P450, subfamily IIC (mephenytoin 4-hydroxylase) rn
RG-U34A:X79081MRNA_F_AT Cytochrome P450, subfamily IIC (mephenytoin 4-hydroxylase) rn
RT-U34:J02657_S_AT Cytochrome P450, subfamily IIC (mephenytoin 4-hydroxylase) rn
RG-U34A:J02657_S_AT Cytochrome P450, subfamily IIC (mephenytoin 4-hydroxylase) rn
RT-U34:M18363CDS_S_AT Cytochrome P450, subfamily IIC (mephenytoin 4-hydroxylase) rn
RG-U34A:M18363CDS_S_AT Cytochrome P450, subfamily IIC (mephenytoin 4-hydroxylase) rn
RAE230A:1387328_AT Cytochrome P450, subfamily IIC (mephenytoin 4-hydroxylase) rn
RAT230_2:1387328_AT Cytochrome P450, subfamily IIC (mephenytoin 4-hydroxylase) rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4497 monooxygenase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC47938 Cytochrome p450 family protein 34A8 [Caenorhabditis elegans] ref|NP_504102.1| CYtochrome P450 family member (cyp-34A8) [Caenorhabditis elegans] 0.0
blast AAC47937 Cytochrome p450 family protein 34A7 [Caenorhabditis elegans] ref|NP_504101.1| CYtochrome P450 family member (cyp-34A7) [Caenorhabditis elegans] 0.0
blast AAC47939 Cytochrome p450 family protein 34A9 [Caenorhabditis elegans] ref|NP_504103.2| CYtochrome P450 family member (cyp-34A9) [Caenorhabditis elegans] 0.0
Protein Families
Method ID Description E-Value
p450 CP1B_MOUSE Animalia; CYP1B-1; mou; CP1B_MOUSE; Mus musculus; Q64429 1.0E-154
p450 CP1B_MOUSE Animalia; CYP1B-1; mou; CP1B_MOUSE; Mus musculus; Q64429 1.0E-162
p450 CP1B_MOUSE Animalia; CYP1B-1; mou; CP1B_MOUSE; Mus musculus; Q64429 1.0E-159
Protein Domains
Database ID Description E-Value
Pfam IPR001128 EMBL-EBI Cytochrome P450 4.9E-32
Pfam IPR001128 EMBL-EBI Cytochrome P450 9.7E-59
Pfam IPR001128 EMBL-EBI Cytochrome P450 1.5E-96
Pfam IPR001128 EMBL-EBI Cytochrome P450 2.6E-81
Pfam IPR001128 EMBL-EBI Cytochrome P450 1.5E-96
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504102.1 1 2-19
B0213.14 1 2-19
SNAP00000025853 1 2-19
GENEFINDER00000025874 1 2-19
Sequence
Target Sequence 
>C. ELEGANS:189485_AT
gtttgatctctggcaagcgggtcaggagaccacatctactactttgacctgggcgtgtgt
gtgcttgctgaaccatccagaagttgtggaaaagctcagaaaagagctgacagaagttac
cggaggaacacgtggagtctcccttactgacagaaccaagacaccatacttgaatgctaa
tataaatgagttccaacgcattgcctcaattctcaacgtcaacctattccgagttctcga
agaggacacaacgattgatagtcagcccgtaccagctggggcactagtcacaaccaatct
ttctatgcttcatactgatgaggaaattttcaaaaatcctcaagaattccgcccagaaag
gtttatggaaaataataacttggagaagagattgataccatttggaattggtaaacgagc
atgccctggtgaatcgttggctagagctgagctgtttttgataaccggaaacatgatcct
agattacgacctagaaccagttggaactcttccaaaaattgagacaactactccatttgc
tccaatgaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTTGATCTCTGGCAAGCGGGTCAG 42 453 918 Antisense
CCACATCTACTACTTTGACCTGGGC 282 275 947 Antisense
TGTGTGTGCTTGCTGAACCATCCAG 264 555 973 Antisense
AAATGAGTTCCAACGCATTGCCTCA 639 119 1101 Antisense
GTCAACCTATTCCGAGTTCTCGAAG 537 463 1135 Antisense
ACGATTGATAGTCAGCCCGTACCAG 184 25 1168 Antisense
GCTGGGGCACTAGTCACAACCAATC 444 295 1192 Antisense
ACAACCAATCTTTCTATGCTTCATA 417 113 1207 Antisense
CAAAAATCCTCAAGAATTCCGCCCA 481 191 1248 Antisense
GAGCATGCCCTGGTGAATCGTTGGC 226 389 1334 Antisense
CAACTACTCCATTTGCTCCAATGAA 444 187 1442 Antisense
Sequence Source Affymetrix Proprietary Database