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[189483_at] casein kinase I

Description T19D12.5 /REP_DB=WormBase Gene ID /WP=CE04980 /TR=Q22573 /GB=AAC24425.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=casein kinase I
Cluster 6grp_total > 87      4grp_total > 09      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 3.3
(-2.3)
A 		3
(-2.5)
A 		2.5
(-3)
A 		9.1
(3)
A 		7
B 2.8
(-2.3)
A 		2.7
(-2.6)
A 		4.2
(3)
A 		2.6
(-3)
A 		2
C 1.6
(-3)
A 		2.3
(-1.9)
A 		2
(-2.4)
A 		5.3
(3)
A 		4
avr 2.6
(-3) 		2.7
(-2.8) 		2.9
(-2.4) 		5.7
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 68
1 2 3 4 5 6 range
A 3.1
(-2.9)
A 		3.6
(-2.9)
A 		1.9
(-3)
A 		6.7
(-2.6)
A 		10.1
(-2.3)
A 		70.2
(3)
A 		68
B 2.4
(-3)
A 		2.8
(-2.9)
A 		4.2
(-2.5)
A 		9
(-1.2)
A 		24.9
(3)
A 		5.8
(-2.1)
A 		23
C 2
(-3)
A 		4.3
(-2.4)
A 		2.9
(-2.8)
A 		8.5
(-1.4)
A 		9.9
(-1.1)
A 		27
(3)
A 		25
avr 2.5
(-3) 		3.6
(-2.8) 		3
(-2.9) 		8.1
(-1.9) 		15
(-0.6) 		34.3
(3) 		32
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1
1 2 3 4 range
A 1.2
(2.1)
A 		0.6
(-3)
A 		0.6
(-3)
A 		1.3
(3)
A 		1
B 0.9
(1.5)
A 		0.7
(-1.5)
A 		1
(3)
A 		0.6
(-3)
A 		0
C 0.5
(-3)
A 		0.7
(-0)
A 		0.7
(-0)
A 		0.9
(3)
A 		0
avr 0.9
(3) 		0.7
(-3) 		0.8
(0) 		0.9
(3) 		0

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 0.6
(-2.9)
A 		1.3
(-2.7)
A 		0.4
(-3)
A 		1.7
(-2.5)
A 		3.1
(-2)
A 		17.1
(3)
A 		17
B 0.9
(-3)
A 		0.9
(-3)
A 		1
(-2.9)
A 		2.4
(-2)
A 		10.1
(3)
A 		2.2
(-2.2)
A 		9
C 0.7
(-3)
A 		1.3
(-2.6)
A 		0.7
(-3)
A 		1.7
(-2.3)
A 		3.2
(-1.2)
A 		9
(3)
A 		8
avr 0.7
(-3) 		1.2
(-2.7) 		0.7
(-3) 		1.9
(-2.2) 		5.5
(0.3) 		9.4
(3) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189483_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5426
Sequence Type Exemplar sequence
Representative Public ID T19D12.5 NCBI
Target Description T19D12.5 /REP_DB=WormBase Gene ID /WP=CE04980 /TR=Q22573 /GB=AAC24425.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=casein kinase I
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062948(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062948 NCBI Caenorhabditis elegans T19D12.5 (T19D12.5) mRNA, complete cds. 11/11 None
SNAP00000003081 ENSEMBL cdna:SNAP chromosome:CEL140:II:6632250:6636107:-1 11/11 None
GENEFINDER00000003096 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:6634883:6636107:-1 11/11 None
T19D12.5 ENSEMBL cdna:known chromosome:CEL140:II:6634883:6636107:-1 gene:T19D12.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:6634879-6636104(-) 100.0 100.0
Public Domain and Genome References
Gene Title casein kinase I
Ensembl T19D12.5
Entrez Gene 188608 Entrez gene
SwissProt Q22573 EMBL-EBI
WormBase CE04980 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6468 protein amino acid phosphorylation inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4672 protein kinase activity inferred from electronic annotation QuickGO AmiGO
4674 protein serine/threonine kinase activity inferred from electronic annotation QuickGO AmiGO
5524 ATP binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC24425 Hypothetical protein T19D12.5 [Caenorhabditis elegans] ref|NP_495349.1| T19D12.5 [Caenorhabditis elegans] 0.0
blast CAE60674 Hypothetical protein CBG04327 [Caenorhabditis briggsae] 1.0E-126
blast CAE67455 Hypothetical protein CBG12956 [Caenorhabditis briggsae] 1.0E-110
Protein Domains
Database ID Description E-Value
Pfam IPR000719 EMBL-EBI Protein kinase 5.8E-21
Sequence
Target Sequence 
>C. ELEGANS:189483_AT
catccatcaggttatcgctgctcttcaggatcttcacgaaacaggatatgttcacagaga
tgtgaagccagcaaacatgtgctttggaatttttcctcatagtcgtcatacattgattct
tcttgatttcggacttgtacgaagatataaaatggaaagtggagaatggagagagcccag
acttcgcgcaggatttcgtggaacgactcgctatgtctctatcagagttcaccgccgttg
cgagcaatcaccgtatgatgatcttgtgtcagttatgtacactgcttacgaacttcttgc
tggtgaactcccatggaaacatcttgaaaaatcagaagaagttgtacagctgaaggaggt
tatgactgaaaatggaatcaatccagagctgttccaaggagacaaaagtgttcttatcga
cttcttcaagcaggtttctgaaatggatccaatgaaagaaccttgctacgagaaactgat
tgaatgcatcaaagttctctacgctccgaaagtcttgactg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CATCCATCAGGTTATCGCTGCTCTT 567 211 507 Antisense
GAATTTTTCCTCATAGTCGTCATAC 432 325 593 Antisense
GAATGGAGAGAGCCCAGACTTCGCG 211 333 670 Antisense
GACTTCGCGCAGGATTTCGTGGAAC 387 371 686 Antisense
GTGGAACGACTCGCTATGTCTCTAT 517 489 704 Antisense
GCCGTTGCGAGCAATCACCGTATGA 602 283 740 Antisense
TACACTGCTTACGAACTTCTTGCTG 131 643 784 Antisense
CTTCTTGCTGGTGAACTCCCATGGA 488 219 799 Antisense
GTGTTCTTATCGACTTCTTCAAGCA 168 485 914 Antisense
AATGCATCAAAGTTCTCTACGCTCC 510 165 989 Antisense
CTCTACGCTCCGAAAGTCTTGACTG 411 229 1003 Antisense
Sequence Source Affymetrix Proprietary Database