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[189481_at] cytochrome P450

Description B0213.10 /REP_DB=WormBase Gene ID /WP=CE16781 /TR=O44655 /GB=AAC47935.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=cytochrome P450
Cluster 6grp_high1_10_10 > 77      6grp_total > 67      4grp_total > 02      6grp_cgc > 48      6grp_high1_sub > Da      6grp_cgc_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 345
1 2 3 4 range
A 36.5
(-2.4)
A 		30.4
(-2.5)
A 		6.7
(-3)
A 		296.4
(3)
P 		290
B 45.2
(-2.3)
A 		3.9
(-3)
A 		53.6
(-2.1)
A 		348.7
(3)
P 		345
C 8.8
(-3)
A 		10.6
(-3)
A 		25.5
(-2.7)
A 		300.8
(3)
P 		292
avr 30.2
(-2.7) 		15
(-3) 		28.6
(-2.7) 		315.3
(3) 		300

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 403
1 2 3 4 5 6 range
A 93.7
(-2.6)
P 		67.1
(-3)
P 		92.1
(-2.6)
P 		107.9
(-2.4)
P 		93.7
(-2.6)
P 		447.6
(3)
P 		381
B 44.7
(-3)
M 		67.9
(-2.6)
A 		69.2
(-2.6)
P 		92
(-2.2)
P 		121.9
(-1.8)
P 		420
(3)
P 		375
C 45.5
(-3)
A 		100.3
(-2.1)
P 		89.1
(-2.3)
P 		110.3
(-1.9)
P 		95
(-2.2)
P 		401.1
(3)
P 		356
avr 61.3
(-3) 		78.4
(-2.7) 		83.5
(-2.6) 		103.4
(-2.3) 		103.5
(-2.3) 		422.9
(3) 		362
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 73
1 2 3 4 range
A 13.3
(-1.3)
A 		6.6
(-2.3)
A 		1.7
(-3)
A 		43.4
(3)
P 		42
B 14.4
(-1.9)
A 		1
(-3)
A 		12.4
(-2.1)
A 		74.3
(3)
P 		73
C 2.9
(-3)
A 		3
(-3)
A 		8.9
(-2.2)
A 		50.7
(3)
P 		48
avr 10.2
(-2.2) 		3.5
(-3) 		7.7
(-2.5) 		56.1
(3) 		53

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 141
1 2 3 4 5 6 range
A 17.3
(-3)
P 		23.9
(-2.6)
P 		20
(-2.8)
P 		27.4
(-2.3)
P 		28.3
(-2.3)
P 		109
(3)
P 		92
B 15.6
(-3)
M 		22.6
(-2.7)
A 		16.8
(-2.9)
P 		24.4
(-2.6)
P 		49.5
(-1.6)
P 		156.6
(3)
P 		141
C 16.9
(-3)
A 		30.6
(-2.3)
P 		22.7
(-2.7)
P 		22.2
(-2.7)
P 		30.7
(-2.3)
P 		134.3
(3)
P 		117
avr 16.6
(-3) 		25.7
(-2.5) 		19.8
(-2.8) 		24.7
(-2.6) 		36.2
(-2) 		133.3
(3) 		117
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189481_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15538
Sequence Type Exemplar sequence
Representative Public ID B0213.10 NCBI
Target Description B0213.10 /REP_DB=WormBase Gene ID /WP=CE16781 /TR=O44655 /GB=AAC47935.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=cytochrome P450
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071698(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071698 NCBI Caenorhabditis elegans CYtochrome P450 family member (cyp-34A5) (cyp-34A5) mRNA, complete cds. 11/11 None
SNAP00000025850 ENSEMBL cdna:SNAP chromosome:CEL140:V:3955579:3957979:-1 11/11 None
GENEFINDER00000025868 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:3955579:3961002:-1 11/11 None
B0213.10 ENSEMBL cdna:known chromosome:CEL140:V:3955579:3957495:-1 gene:B0213.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:3955578-3957495(-) 100.0 100.0
Public Domain and Genome References
Gene Title cytochrome P450
Gene Symbol cyp-34A5
Ensembl B0213.10
Entrez Gene 181847 Entrez gene
SwissProt O44655 EMBL-EBI
WormBase CE16781 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:257634_S_AT cytochrome P450 71B19, putative (CYP71B19) at
CANINE:1582735_S_AT cytochrome P450 2C21 cfa
CANINE:1582736_AT cytochrome P450 2C21 cfa
CANINE_2:CFA.3741.1.A1_S_AT cytochrome P450 2C21 cfa
CANINE_2:CFA.3741.1.A2_S_AT cytochrome P450 2C21 cfa
HG-U133_PLUS_2:216025_X_AT cytochrome P450, family 2, subfamily C, polypeptide 19 hs
HG-U133A_2:216025_X_AT cytochrome P450, family 2, subfamily C, polypeptide 19 hs
HG-U133A:216025_X_AT cytochrome P450, family 2, subfamily C, polypeptide 19 hs
HG-U133_PLUS_2:216058_S_AT cytochrome P450, family 2, subfamily C, polypeptide 19 hs
HG-U133A_2:216058_S_AT cytochrome P450, family 2, subfamily C, polypeptide 19 hs
HG-U133A:216058_S_AT cytochrome P450, family 2, subfamily C, polypeptide 19 hs
HG-U95AV2:1002_F_AT cytochrome P450, family 2, subfamily C, polypeptide 19 hs
HC-G110:1002_F_AT cytochrome P450, family 2, subfamily C, polypeptide 19 hs
HU35KSUBA:M61854_S_AT cytochrome P450, family 2, subfamily C, polypeptide 19 hs
HUGENEFL:X65962_S_AT cytochrome P450, family 2, subfamily C, polypeptide 19 hs
U133_X3P:HS.296816.0.S1_3P_S_AT cytochrome P450, family 2, subfamily C, polypeptide 19 hs
HG-U95AV2:34078_S_AT cytochrome P450, family 2, subfamily C, polypeptide 19 hs
MG-U74AV2:98295_AT cytochrome P450, family 2, subfamily c, polypeptide 39 mm
MOE430A:1421363_AT cytochrome P450, family 2, subfamily c, polypeptide 39 mm
MOUSE430A_2:1421363_AT cytochrome P450, family 2, subfamily c, polypeptide 39 mm
MOUSE430_2:1421363_AT cytochrome P450, family 2, subfamily c, polypeptide 39 mm
MOE430A:1452501_AT cytochrome P450, family 2, subfamily c, polypeptide 39 mm
MOUSE430A_2:1452501_AT cytochrome P450, family 2, subfamily c, polypeptide 39 mm
MOUSE430_2:1452501_AT cytochrome P450, family 2, subfamily c, polypeptide 39 mm
RT-U34:M24239CDS#2_F_AT cytochrome P450, 2c37 rn
RG-U34A:M24239CDS#2_F_AT cytochrome P450, 2c37 rn
RT-U34:RC_AA945571_S_AT cytochrome P450, 2c37 rn
RG-U34A:RC_AA945571_S_AT cytochrome P450, 2c37 rn
RG-U34A:M14776_F_AT cytochrome P450, 2c37 rn
RAE230A:1370580_A_AT cytochrome P450, 2c37 rn
RAT230_2:1370580_A_AT cytochrome P450, 2c37 rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4497 monooxygenase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC47935 Cytochrome p450 family protein 34A5 [Caenorhabditis elegans] ref|NP_504099.1| CYtochrome P450 family member (cyp-34A5) [Caenorhabditis elegans] 0.0
blast CAB02827 Hypothetical protein C41G6.1 [Caenorhabditis elegans] ref|NP_506765.1| CYtochrome P450 family member (cyp-34A3) [Caenorhabditis elegans] 0.0
blast AAC47939 Cytochrome p450 family protein 34A9 [Caenorhabditis elegans] ref|NP_504103.2| CYtochrome P450 family member (cyp-34A9) [Caenorhabditis elegans] 0.0
blast CAE58177 Hypothetical protein CBG01269 [Caenorhabditis briggsae] 0.0
blast AAC47936 Cytochrome p450 family protein 34A6 [Caenorhabditis elegans] ref|NP_504100.2| CYtochrome P450 family member (cyp-34A6) [Caenorhabditis elegans] 0.0
blast AAC47937 Cytochrome p450 family protein 34A7 [Caenorhabditis elegans] ref|NP_504101.1| CYtochrome P450 family member (cyp-34A7) [Caenorhabditis elegans] 0.0
Protein Families
Method ID Description E-Value
p450 CP1B_MOUSE Animalia; CYP1B-1; mou; CP1B_MOUSE; Mus musculus; Q64429 1.0E-155
p450 CP1B_MOUSE Animalia; CYP1B-1; mou; CP1B_MOUSE; Mus musculus; Q64429 1.0E-162
Protein Domains
Database ID Description E-Value
Pfam IPR001128 EMBL-EBI Cytochrome P450 2.7E-96
Pfam IPR001128 EMBL-EBI Cytochrome P450 2.3E-92
Pfam IPR001128 EMBL-EBI Cytochrome P450 1.9E-29
Pfam IPR001128 EMBL-EBI Cytochrome P450 2.8E-70
Pfam IPR001128 EMBL-EBI Cytochrome P450 8.0E-93
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000025868 1 2-19
Sequence
Target Sequence 
>C. ELEGANS:189481_AT
gctattgacctgttcgacttgtggctagctggacaggagacaacttcaacgaccttgacg
tgggcaggcacgtgccttctgaatcatccagaagttgtagagaagctgaggaaagagctg
attcaaataactggtggaactcgtagtgtatcgttgactgatcgagcacaaactccttat
ttgactgcggttgttaatgaggttcaaagaatatcttcaattctaaatgtaaacattttc
cgtcaactccaagaagactctcatatcgacggacaaccaatcgcgtctggttcagtcgtg
acaactcaacttgcaatgattcacactgatgaagatttgttcaaagatcatactaaattt
gatccggaaagattcatcgagaataataatttggataaaaagctgataccatttggaatt
gggaaacgatcatgccccggagagtcgttggctagagccgagctgtatttgataattgga
aacttggttttggacttcaacttggaagcagtcggagttaaaccagagatcaagacttct
acgccgttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCTATTGACCTGTTCGACTTGTGGC 110 303 907 Antisense
TCAACGACCTTGACGTGGGCAGGCA 377 629 952 Antisense
GACTGATCGAGCACAAACTCCTTAT 704 375 1062 Antisense
ACTCCTTATTTGACTGCGGTTGTTA 220 99 1078 Antisense
TAAACATTTTCCGTCAACTCCAAGA 100 639 1136 Antisense
GAAGACTCTCATATCGACGGACAAC 656 339 1159 Antisense
GACGGACAACCAATCGCGTCTGGTT 55 377 1174 Antisense
GCGTCTGGTTCAGTCGTGACAACTC 141 293 1189 Antisense
GATCATGCCCCGGAGAGTCGTTGGC 238 419 1334 Antisense
GAGTCGTTGGCTAGAGCCGAGCTGT 699 399 1348 Antisense
AGAGATCAAGACTTCTACGCCGTTT 236 69 1431 Antisense
Sequence Source Affymetrix Proprietary Database