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[189480_at] RSP5 like protein

Description F13E6.4 /REP_DB=WormBase Gene ID /WP=CE03201 /TR=Q19404 /GB=CAA92121.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=RSP5 like protein
Cluster 6grp_highest_10_10 > 99      6grp_high1_10_10 > 99      4grp_highest_8_8 > 51      4grp_high_8_8 > 24      6grp_highest_nonorm > 81      6grp_total > 94      4grp_total > 47      6grp_total_sub > Hat      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 193
1 2 3 4 range
A 453.1
(3)
P 		361.3
(-2)
P 		342.5
(-3)
P 		363.8
(-1.8)
P 		111
B 417.9
(3)
P 		346.1
(-1)
P 		311.4
(-3)
P 		356.3
(-0.5)
P 		107
C 504.2
(3)
P 		352
(-3)
P 		387.9
(-1.6)
P 		375.7
(-2.1)
P 		152
avr 458.4
(3) 		353.1
(-2.7) 		347.3
(-3) 		365.3
(-2) 		111

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 351
1 2 3 4 5 6 range
A 235.6
(-1.6)
P 		495.3
(3)
P 		159.9
(-3)
P 		407.3
(1.4)
P 		214.6
(-2)
P 		331.1
(0.1)
P 		335
B 154.9
(-3)
P 		164.8
(-2.1)
P 		199.8
(1.2)
P 		191
(0.4)
P 		201.8
(1.4)
P 		219.1
(3)
P 		64
C 347.2
(0.7)
P 		144.1
(-3)
P 		370.2
(1.1)
P 		183.1
(-2.3)
P 		474.5
(3)
P 		262.7
(-0.8)
P 		330
avr 245.9
(-2.7) 		268.1
(-0.2) 		243.3
(-3) 		260.5
(-1.1) 		297
(3) 		271
(0.1) 		54
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 114
1 2 3 4 range
A 165
(3)
P 		78.4
(-1.7)
P 		89.5
(-1.1)
P 		53.3
(-3)
P 		112
B 133.3
(3)
P 		85.5
(-1.7)
P 		72.2
(-3)
P 		75.9
(-2.6)
P 		61
C 166.9
(3)
P 		101.2
(-0.8)
P 		135.2
(1.2)
P 		63.4
(-3)
P 		104
avr 155.1
(3) 		88.4
(-1.4) 		99
(-0.7) 		64.2
(-3) 		91

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 141
1 2 3 4 5 6 range
A 43.4
(-2.6)
P 		176.1
(3)
P 		34.8
(-3)
P 		103.3
(-0.1)
P 		64.8
(-1.7)
P 		80.6
(-1.1)
P 		141
B 53.9
(-2)
P 		54.9
(-1.9)
P 		48.5
(-3)
P 		50.6
(-2.6)
P 		82
(3)
P 		81.7
(2.9)
P 		34
C 128.7
(1.7)
P 		44
(-2.6)
P 		94.2
(-0)
P 		36.8
(-3)
P 		153.5
(3)
P 		88
(-0.4)
P 		117
avr 75.3
(-0.6) 		91.7
(1.8) 		59.2
(-3) 		63.6
(-2.4) 		100.1
(3) 		83.4
(0.6) 		41
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189480_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17094
Sequence Type Exemplar sequence
Representative Public ID F13E6.4 NCBI
Target Description F13E6.4 /REP_DB=WormBase Gene ID /WP=CE03201 /TR=Q19404 /GB=CAA92121.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=RSP5 like protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077388(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077388 NCBI Caenorhabditis elegans F13E6.4 (F13E6.4) mRNA, complete cds. 11/11 None
GENEFINDER00000007377 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:10691872:10694304:1 11/11 None
SNAP00000007371 ENSEMBL cdna:SNAP chromosome:CEL140:X:10692312:10694304:1 11/11 None
F13E6.4 ENSEMBL cdna:known chromosome:CEL140:X:10691867:10694999:1 gene:F13E6.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:10691871-10694304(+) 100.0 100.0
Public Domain and Genome References
Gene Title RSP5 like protein
Ensembl F13E6.4
Entrez Gene 181267 Entrez gene
SwissProt Q19404 EMBL-EBI
WormBase CE37348 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA92121 Hypothetical protein F13E6.4 [Caenorhabditis elegans] ref|NP_509789.2| F13E6.4 [Caenorhabditis elegans] 0.0
blast CAE60815 Hypothetical protein CBG04520 [Caenorhabditis briggsae] 1.0E-112
blast CAE60815 Hypothetical protein CBG04520 [Caenorhabditis briggsae] 1.0E-108
blast XP_508718 PREDICTED: similar to YAP1 protein [Pan troglodytes] 2.0E-9
Protein Domains
Database ID Description E-Value
Pfam IPR001202 EMBL-EBI WW/Rsp5/WWP domain 8.3E-13
Pfam IPR001202 EMBL-EBI WW/Rsp5/WWP domain 8.3E-13
Sequence
Target Sequence 
>C. ELEGANS:189480_AT
gacaatggacactcgtctcgatcattgccctcaattcatcagcaccagcagatgattccc
aatcatccacaaccacaatactcttctcagcagcaaatggattatattcagcagttacaa
aacgaacgaatgatgattcaagagaagaacgcgcagctgatcaattctggacttgtcgac
agtccgcaaccaccatatcaagcaatttcccccatgtcatcaactatgatgcattctcat
gatccaaatttcatgtaccaacaacaacaacaggctcaaaactctcaacaacaacagaca
ccgcatacattgcaccagatcccaaatcaataccaaaatagtcaaatgaacgacgacagt
gcgatggaagtcgattattccatggtatcacacccccagcaactacaacatcagcatcaa
ccacatatgcataataatatgcctagcaattatgtaatcgatgatatcaatccacacgaa
ttcgacca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACAATGGACACTCGTCTCGATCAT 67 365 835 Antisense
CGATCATTGCCCTCAATTCATCAGC 638 247 853 Antisense
CAGCACCAGCAGATGATTCCCAATC 161 203 874 Antisense
CACAATACTCTTCTCAGCAGCAAAT 220 195 908 Antisense
AACGCGCAGCTGATCAATTCTGGAC 122 147 982 Antisense
TGGACTTGTCGACAGTCCGCAACCA 562 545 1002 Antisense
AACCACCATATCAAGCAATTTCCCC 702 147 1022 Antisense
AGACACCGCATACATTGCACCAGAT 704 71 1130 Antisense
GATTATTCCATGGTATCACACCCCC 370 429 1207 Antisense
CTACAACATCAGCATCAACCACATA 287 225 1237 Antisense
ATATCAATCCACACGAATTCGACCA 684 19 1298 Antisense
Sequence Source Affymetrix Proprietary Database