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[189478_at] 7TM receptor-like

Description T10G3.4 /REP_DB=WormBase Gene ID /WP=CE13567 /TR=P92166 /GB=CAB03327.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=7TM receptor-like
Cluster 6grp_high1_10_10 > 21      6grp_total > 22      4grp_total > 11      6grp_high1_sub > 03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 88
1 2 3 4 range
A 52.3
(-1.6)
P 		36.6
(-2.8)
P 		33.7
(-3)
A 		110.8
(3)
P 		77
B 44.3
(-0.8)
P 		32.5
(-2.3)
A 		27.1
(-3)
A 		74.3
(3)
P 		47
C 33.1
(-1.5)
A 		52.1
(1.3)
A 		22.7
(-3)
A 		63.3
(3)
P 		41
avr 43.2
(-1.3) 		40.4
(-1.6) 		27.8
(-3) 		82.8
(3) 		55

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 97
1 2 3 4 5 6 range
A 88.2
(1.4)
P 		67.8
(-0.3)
P 		108
(3)
P 		55.4
(-1.4)
P 		39.9
(-2.7)
P 		35.9
(-3)
A 		72
B 56.1
(1.7)
P 		52.1
(1.2)
P 		66.8
(3)
P 		17.7
(-3)
A 		53.3
(1.4)
P 		21.2
(-2.6)
P 		49
C 54.3
(0.6)
M 		83.9
(3)
P 		13.9
(-2.8)
A 		70.2
(1.9)
P 		35.2
(-1)
P 		11.1
(-3)
A 		73
avr 66.2
(2.8) 		67.9
(3) 		62.9
(2.3) 		47.8
(0.3) 		42.8
(-0.3) 		22.7
(-3) 		45
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 19
(3)
P 		7.9
(-3)
P 		8.8
(-2.5)
A 		16.2
(1.5)
P 		11
B 14.1
(1.9)
P 		8
(-1.9)
A 		6.3
(-3)
A 		15.8
(3)
P 		10
C 11
(-0.4)
A 		15
(3)
A 		7.9
(-3)
A 		10.7
(-0.6)
P 		7
avr 14.7
(3) 		10.3
(-0.8) 		7.7
(-3) 		14.2
(2.6) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 22
1 2 3 4 5 6 range
A 16.3
(-0)
P 		24.1
(3)
P 		23.5
(2.8)
P 		14.1
(-0.9)
P 		12
(-1.7)
P 		8.7
(-3)
A 		15
B 19.5
(2.3)
P 		17.4
(1.5)
P 		16.2
(1.1)
P 		4.7
(-3)
A 		21.6
(3)
P 		7.9
(-1.9)
P 		17
C 20.1
(1.5)
M 		25.6
(3)
P 		3.5
(-3)
A 		14.1
(-0.1)
P 		11.4
(-0.9)
P 		3.7
(-2.9)
A 		22
avr 18.6
(1.5) 		22.4
(3) 		14.4
(-0.1) 		11
(-1.4) 		15
(0.2) 		6.8
(-3) 		16
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189478_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13076
Sequence Type Exemplar sequence
Representative Public ID T10G3.4 NCBI
Target Description T10G3.4 /REP_DB=WormBase Gene ID /WP=CE13567 /TR=P92166 /GB=CAB03327.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=7TM receptor-like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073944(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073944 NCBI Caenorhabditis elegans T10G3.4 (T10G3.4) mRNA, complete cds. 11/11 None
SNAP00000037915 ENSEMBL cdna:SNAP chromosome:CEL140:V:13484666:13486372:-1 10/11 None
GENEFINDER00000037925 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:13479975:13487020:-1 11/11 None
T10G3.4 ENSEMBL cdna:known chromosome:CEL140:V:13485181:13487020:-1 gene:T10G3.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:13485180-13487020(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM receptor-like
Ensembl T10G3.4
Entrez Gene 188390 Entrez gene
SwissProt P92166 EMBL-EBI
WormBase CE13567 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03327 Hypothetical protein T10G3.4 [Caenorhabditis elegans] ref|NP_506345.1| T10G3.4 [Caenorhabditis elegans] 1.0E-168
blast CAB03327 Hypothetical protein T10G3.4 [Caenorhabditis elegans] ref|NP_506345.1| T10G3.4 [Caenorhabditis elegans] 1.0E-159
blast CAB03325 Hypothetical protein T10G3.2 [Caenorhabditis elegans] ref|NP_506344.1| T10G3.2 [Caenorhabditis elegans] 1.0E-154
blast CAE62578 Hypothetical protein CBG06691 [Caenorhabditis briggsae] 1.0E-125
blast CAE62578 Hypothetical protein CBG06691 [Caenorhabditis briggsae] 1.0E-121
blast CAB03327 Hypothetical protein T10G3.4 [Caenorhabditis elegans] ref|NP_506345.1| T10G3.4 [Caenorhabditis elegans] 1.0E-100
blast CAE62578 Hypothetical protein CBG06691 [Caenorhabditis briggsae] 1.0E-77
blast CAE62571 Hypothetical protein CBG06684 [Caenorhabditis briggsae] 3.0E-38
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506345.1 7 10-32,45-67,87-109,122-142,157-179,200-222,242-264
T10G3.4 7 10-32,45-67,87-109,122-142,157-179,200-222,242-264
SNAP00000037915 3 30-52,65-87,110-132
GENEFINDER00000037925 14 13-35,45-67,88-107,122-144,157-179,202-224,245-264,330-352,364-386,415-437,449-468,483-502,530-552,574-596
Sequence
Target Sequence 
>C. ELEGANS:189478_AT
gcgactttgtgctactatttttgtgagctcttatgaacattcgaggcattggtttatgta
tattattggtcaaggactgggggtgggtgtagtgtattacgaaaactttttagtaaacaa
tggacaatacaatgataccgcaaaaaatgtgcaattcggattgtcgatttgtatttgtat
ttgccttgttattttattctttgtcaatcgtcatttgacattcaactctcggcacaaatc
tgtacttacagtaaggtatcagctagctgagaatgtgaaggctttgagaacttttgtacc
atttgttgtagtggataactgtttatcagttctatttgtactttctatgattttgttcaa
agttgacttcaacatagacctagatgtatgcagaagtcatccagggtatacagttagttt
tgcattatttagagcgattcttctattaacccaactattcatgcctcttctcgttgtgaa
acagcatagttcaatctggaatcaaatcaagcctctgatggagagaaggaaaccaacagt
tcgtcagagcattgacccggatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCGACTTTGTGCTACTATTTTTGTG 416 289 327 Antisense
GGTCAAGGACTGGGGGTGGGTGTAG 242 1 394 Antisense
GTATTTGCCTTGTTATTTTATTCTT 259 453 503 Antisense
ATTTGACATTCAACTCTCGGCACAA 56 19 539 Antisense
CTCTCGGCACAAATCTGTACTTACA 296 231 552 Antisense
GGCTTTGAGAACTTTTGTACCATTT 107 539 606 Antisense
GTTCTATTTGTACTTTCTATGATTT 631 443 655 Antisense
GCGATTCTTCTATTAACCCAACTAT 312 289 760 Antisense
ATTAACCCAACTATTCATGCCTCTT 328 11 771 Antisense
CATGCCTCTTCTCGTTGTGAAACAG 272 211 786 Antisense
GTTCGTCAGAGCATTGACCCGGATC 368 441 865 Antisense
Sequence Source Affymetrix Proprietary Database