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[189475_at] 7TM chemoreceptor, str family

Description ZK697.10 /REP_DB=WormBase Gene ID /WP=CE18459 /GEN=str-160 /GB=AAC48250.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster 6grp_total > 52      4grp_total > 30      6grp_cgc > 91      6grp_cgc_sub > 03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 34
1 2 3 4 range
A 6.2
(2.6)
A 		5.7
(1.9)
A 		2.2
(-3)
A 		6.5
(3)
A 		4
B 3.6
(-0.9)
A 		5.7
(3)
A 		2.5
(-3)
A 		3.9
(-0.4)
A 		3
C 36.1
(3)
A 		3.9
(-2.8)
A 		3
(-3)
A 		25.3
(1)
A 		33
avr 15.3
(3) 		5.1
(-1.8) 		2.6
(-3) 		11.9
(1.4) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 26
1 2 3 4 5 6 range
A 8.6
(-1.8)
A 		5.8
(-2.5)
A 		27.9
(3)
A 		5.6
(-2.6)
A 		4
(-3)
A 		6.2
(-2.4)
A 		24
B 10.9
(1.7)
A 		2.1
(-2.8)
A 		1.7
(-3)
A 		11.9
(2.2)
A 		13.4
(3)
A 		2.7
(-2.5)
A 		12
C 3
(-2.6)
A 		15.6
(0.6)
A 		25
(3)
A 		13.4
(0)
A 		1.8
(-2.9)
A 		1.6
(-3)
A 		23
avr 7.5
(-1.4) 		7.8
(-1.2) 		18.2
(3) 		10.3
(-0.2) 		6.4
(-1.8) 		3.5
(-3) 		15
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 2.2
(3)
A 		1.2
(-0.8)
A 		0.6
(-3)
A 		0.9
(-1.9)
A 		2
B 1.1
(0.8)
A 		1.4
(3)
A 		0.6
(-3)
A 		0.8
(-1.5)
A 		1
C 11.9
(3)
A 		1.1
(-3)
A 		1.1
(-3)
A 		4.3
(-1.2)
A 		11
avr 5.1
(3) 		1.2
(-2.4) 		0.8
(-3) 		2
(-1.3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 6
1 2 3 4 5 6 range
A 1.6
(-2.5)
A 		2.1
(-1.9)
A 		6.1
(3)
A 		1.4
(-2.8)
A 		1.2
(-3)
A 		1.5
(-2.6)
A 		5
B 3.8
(1.1)
A 		0.7
(-2.6)
A 		0.4
(-3)
A 		3.2
(0.4)
A 		5.4
(3)
A 		1
(-2.3)
A 		5
C 1.1
(-2.4)
A 		4.8
(1.4)
A 		6.4
(3)
A 		2.7
(-0.8)
A 		0.6
(-2.9)
A 		0.5
(-3)
A 		6
avr 2.2
(-0.8) 		2.5
(-0.3) 		4.3
(3) 		2.4
(-0.5) 		2.4
(-0.5) 		1
(-3) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189475_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14995
Sequence Type Exemplar sequence
Representative Public ID ZK697.10 NCBI
Target Description ZK697.10 /REP_DB=WormBase Gene ID /WP=CE18459 /GEN=str-160 /GB=AAC48250.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071092(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071092 NCBI Caenorhabditis elegans Seven TM Receptor family member (str-160) (str-160) mRNA, complete cds. 11/11 None
ZK697.10 ENSEMBL cdna:known chromosome:CEL140:V:1734698:1736413:1 gene:ZK697.10 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000036774 2/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:1734697-1736413(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, str family
Gene Symbol str-160
Ensembl ZK697.10
Entrez Gene 192018 Entrez gene
SwissProt Q965K9 EMBL-EBI
WormBase CE18459 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC48250 Seven tm receptor protein 160 [Caenorhabditis elegans] ref|NP_503493.1| Seven TM Receptor family member (str-160) [Caenorhabditis elegans] 0.0
blast NP_500668 Seven TM Receptor family member (str-161) [Caenorhabditis elegans] gb|AAB94157.1| Seven tm receptor protein 161 [Caenorhabditis elegans] 1.0E-104
blast NP_500671 Seven TM Receptor family member (str-159) [Caenorhabditis elegans] 7.0E-94
Protein Domains
Database ID Description E-Value
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 3.3E-9
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503493.1 7 10-32,45-67,92-114,134-156,201-223,251-273,288-307
ZK697.10 7 10-32,45-67,92-114,134-156,201-223,251-273,288-307
Sequence
Target Sequence 
>C. ELEGANS:189475_AT
ggttggttcattggatttctctatccttacttgcgggcataatagagtctttactcttcc
tattccttggtcctcaaagggaactgtctgattatgtcagagcgaacttaagagagtttt
atgatttggatgttgacaaaactgtttatgtcggatggtggtattggaaaatggaaaatg
gaaatgtgaacttaagcgttgactacttattgaaatttttgataatgaatatttcgatga
tcataccgtttttcacaattgtttattacgggacaaagagttattttaaaatcaaaacgg
ttttgtctcaaggcgaaagtgaatactcacgaaggcttcagagccagctgtacaaagtgc
ttgttgctcaaacttttattcctgtcgtctttttatttattccaactggatttttcctta
tctgcccactgtttggtctaaatatacaatggtctaataaacccataataagtatgtatt
cactctacattgcactcgattcgattcccgtgatttttctag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGTTGGTTCATTGGATTTCTCTATC 131 507 410 Antisense
TCTATCCTTACTTGCGGGCATAATA 528 613 429 Antisense
TAGAGTCTTTACTCTTCCTATTCCT 582 651 452 Antisense
TTCCTATTCCTTGGTCCTCAAAGGG 233 699 466 Antisense
GATCATACCGTTTTTCACAATTGTT 61 421 648 Antisense
GAAGGCTTCAGAGCCAGCTGTACAA 674 333 740 Antisense
GTTGCTCAAACTTTTATTCCTGTCG 633 439 772 Antisense
CAACTGGATTTTTCCTTATCTGCCC 574 133 812 Antisense
TTATCTGCCCACTGTTTGGTCTAAA 443 677 827 Antisense
TCACTCTACATTGCACTCGATTCGA 415 627 889 Antisense
GATTCGATTCCCGTGATTTTTCTAG 177 433 907 Antisense
Sequence Source Affymetrix Proprietary Database