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[189471_at] cysteine protease

Description F15D4.4 /REP_DB=WormBase Gene ID /WP=CE09417 /TR=Q93512 /GB=CAB02487.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=cysteine protease
Cluster 6grp_total > 05      4grp_total > 30      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 103
1 2 3 4 range
A 144
(2.4)
A 		115.4
(0.3)
A 		70.7
(-3)
A 		151.4
(3)
A 		81
B 173.4
(3)
P 		114.5
(-1.9)
A 		100.9
(-3)
A 		139
(0.2)
P 		73
C 168.5
(3)
M 		121.1
(-1.1)
A 		98.7
(-3)
A 		126.8
(-0.6)
A 		70
avr 162
(3) 		117
(-0.8) 		90.1
(-3) 		139.1
(1.1) 		72

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 157
1 2 3 4 5 6 range
A 192.5
(3)
A 		153.9
(1.2)
P 		119.5
(-0.4)
A 		134.1
(0.3)
A 		129.5
(0)
A 		65
(-3)
A 		128
B 211.7
(3)
P 		140
(0.2)
A 		123
(-0.4)
A 		94.8
(-1.5)
A 		121.9
(-0.5)
A 		56.7
(-3)
A 		155
C 214
(3)
P 		152
(0.5)
A 		177.2
(1.5)
M 		66.3
(-3)
A 		155.7
(0.6)
A 		79.9
(-2.4)
A 		148
avr 206.1
(3) 		148.6
(0.5) 		139.9
(0.1) 		98.4
(-1.7) 		135.7
(-0) 		67.2
(-3) 		139
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 37
1 2 3 4 range
A 52.4
(3)
A 		25
(-1.8)
A 		18.5
(-3)
A 		22.2
(-2.3)
A 		34
B 55.3
(3)
P 		28.3
(-2.1)
A 		23.4
(-3)
A 		29.6
(-1.8)
P 		32
C 55.8
(3)
M 		34.8
(-0.7)
A 		34.4
(-0.7)
A 		21.4
(-3)
A 		34
avr 54.5
(3) 		29.4
(-2) 		25.4
(-2.8) 		24.4
(-3) 		30

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 66
1 2 3 4 5 6 range
A 35.5
(0)
A 		54.7
(3)
P 		26
(-1.4)
A 		34
(-0.2)
A 		39.1
(0.6)
A 		15.8
(-3)
A 		39
B 73.7
(3)
P 		46.6
(-0.1)
A 		29.9
(-2)
A 		25.1
(-2.6)
A 		49.5
(0.2)
A 		21.2
(-3)
A 		53
C 79.3
(3)
P 		46.4
(0)
A 		45.1
(-0.1)
M 		13.3
(-3)
A 		50.4
(0.4)
A 		26.8
(-1.8)
A 		66
avr 62.8
(3) 		49.2
(1) 		33.7
(-1.2) 		24.1
(-2.6) 		46.3
(0.6) 		21.3
(-3) 		42
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189471_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3331
Sequence Type Exemplar sequence
Representative Public ID F15D4.4 NCBI
Target Description F15D4.4 /REP_DB=WormBase Gene ID /WP=CE09417 /TR=Q93512 /GB=CAB02487.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=cysteine protease
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064404(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064404 NCBI Caenorhabditis elegans F15D4.4 (F15D4.4) mRNA, complete cds. 10/11 None
GENEFINDER00000038524 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:13239016:13242991:-1 11/11 None
F15D4.4 ENSEMBL cdna:known chromosome:CEL140:II:13239166:13243011:-1 gene:F15D4.4 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000038515 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:13239012-13242988(-) 91.9 100.0
Public Domain and Genome References
Gene Title cysteine protease
Ensembl F15D4.4
Entrez Gene 184530 Entrez gene
SwissProt Q93512 EMBL-EBI
WormBase CE35487 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6508 proteolysis inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4197 cysteine-type endopeptidase activity inferred from electronic annotation QuickGO AmiGO
8234 cysteine-type peptidase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB02487 Hypothetical protein F15D4.4 [Caenorhabditis elegans] ref|NP_496805.2| F15D4.4 [Caenorhabditis elegans] 0.0
blast CAE59447 Hypothetical protein CBG02822 [Caenorhabditis briggsae] 1.0E-166
blast BAA14402.1 unnamed protein product [Oryza sativa (japonica cultivar-group)] sp|P25776|ORYA_ORYSA Oryzain alpha chain precursor 7.0E-31
Sequence
Target Sequence 
>C. ELEGANS:189471_AT
caaatattggtctcaagccaccgccgtcggcgccaacgagacgtatgctccgccgaaagc
cggcggcggagagtttgtggtcccgacaacaagagctccgactgttgctacagtggctcc
ggcctcctcctccggagcagttgatgagtgtggagagggtttgtgtgaagaagattgtgg
gtgtgatgattatgatgaggacgatgaagatgaagtggatgaggaggacaaggaggagaa
gcttctacaccgactacaagtacatccacatcaacttcgacttcaaccccttctacaaca
acttccacaacatctacaagcaccaccagctccaccagctcctcagctccaattcgagca
gttcgaactagcactccgactactagaagaacaactacaacaactcctagacgtaccacg
actcctcgaaaaacgattttcggcagaatgtccgatggatggaacaatttttggggataa
attactgtgtagaagaaataataaagtgcaacccatgtggtcctgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAAATATTGGTCTCAAGCCACCGCC 429 193 1326 Antisense
CGGCGCCAACGAGACGTATGCTCCG 188 239 1353 Antisense
CGGCGGCGGAGAGTTTGTGGTCCCG 628 219 1386 Antisense
ACAAGAGCTCCGACTGTTGCTACAG 395 111 1414 Antisense
TCCTCCTCCGGAGCAGTTGATGAGT 346 593 1450 Antisense
GAAGCTTCTACACCGACTACAAGTA 642 341 1563 Antisense
TACATCCACATCAACTTCGACTTCA 133 645 1586 Antisense
AACTTCCACAACATCTACAAGCACC 79 139 1625 Antisense
CGAGCAGTTCGAACTAGCACTCCGA 246 251 1680 Antisense
CTACAACAACTCCTAGACGTACCAC 706 225 1720 Antisense
TAAAGTGCAACCCATGTGGTCCTGG 677 639 1827 Antisense
Sequence Source Affymetrix Proprietary Database