[Home] | [Total List]

[189469_at] cysteine protease

Description F36D3.9 /REP_DB=WormBase Gene ID /WP=CE15973 /TR=O45466 /GB=CAB04322.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=cysteine protease
Cluster 6grp_highest_10_10 > 19      6grp_high1_10_10 > 91      4grp_highest_8_8 > 30      4grp_high_8_8 > 05      6grp_highest_nonorm > 91      6grp_total > 83      4grp_total > 04      6grp_highest_sub > 05      6grp_cgc > 87      6grp_high1_sub > 05      6grp_cgc_sub > 05      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2603
1 2 3 4 range
A 576.3
(-2)
P 		162
(-3)
P 		158.6
(-3)
P 		2723
(3)
P 		2564
B 706.7
(-1.5)
P 		119.7
(-3)
P 		172.8
(-2.9)
P 		2413.1
(3)
P 		2293
C 684.3
(-1.6)
P 		163.5
(-2.9)
P 		119.7
(-3)
P 		2490.2
(3)
P 		2371
avr 655.8
(-1.7) 		148.4
(-3) 		150.4
(-3) 		2542.1
(3) 		2394

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 218
1 2 3 4 5 6 range
A 139.5
(-2.8)
P 		188.5
(-1.3)
P 		132.5
(-3)
P 		214
(-0.5)
P 		330.5
(3)
P 		181.2
(-1.5)
P 		198
B 139
(-3)
P 		205.6
(-0)
P 		186.2
(-0.9)
P 		260.5
(2.4)
P 		274.2
(3)
P 		170.6
(-1.6)
P 		135
C 137.9
(-2.1)
P 		155.4
(-1.6)
P 		137.4
(-2.2)
P 		261.4
(1.9)
P 		293.6
(3)
P 		112.2
(-3)
P 		181
avr 138.8
(-3) 		183.2
(-1.3) 		152
(-2.5) 		245.3
(1) 		299.4
(3) 		154.7
(-2.4) 		161
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 485
1 2 3 4 range
A 209.8
(-0.1)
P 		35.2
(-3)
P 		41.5
(-2.9)
P 		398.6
(3)
P 		363
B 225.4
(-0.6)
P 		29.6
(-3)
P 		40
(-2.9)
P 		514.2
(3)
P 		485
C 226.5
(-0.1)
P 		47
(-2.9)
P 		41.7
(-3)
P 		419.9
(3)
P 		378
avr 220.6
(-0.3) 		37.3
(-3) 		41.1
(-2.9) 		444.2
(3) 		407

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 86
1 2 3 4 5 6 range
A 25.7
(-3)
P 		67
(0.3)
P 		28.9
(-2.7)
P 		54.3
(-0.7)
P 		99.7
(3)
P 		44.1
(-1.5)
P 		74
B 48.4
(-2.7)
P 		68.5
(-0.9)
P 		45.2
(-3)
P 		69
(-0.8)
P 		111.4
(3)
P 		63.6
(-1.3)
P 		66
C 51.1
(-1.4)
P 		47.4
(-1.8)
P 		35
(-3)
P 		52.6
(-1.2)
P 		95
(3)
P 		37.6
(-2.7)
P 		60
avr 41.7
(-2.5) 		61
(-0.8) 		36.4
(-3) 		58.6
(-1) 		102
(3) 		48.4
(-1.9) 		66
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189469_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14305
Sequence Type Exemplar sequence
Representative Public ID F36D3.9 NCBI
Target Description F36D3.9 /REP_DB=WormBase Gene ID /WP=CE15973 /TR=O45466 /GB=CAB04322.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=cysteine protease
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074785(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074785 NCBI Caenorhabditis elegans Cysteine PRotease related family member (cpr-2) (cpr-2) mRNA, complete cds. 10/11 None
SNAP00000025155 ENSEMBL cdna:SNAP chromosome:CEL140:V:16535586:16536666:-1 10/11 None
GENEFINDER00000025161 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:16535586:16536609:-1 10/11 None
F36D3.9 ENSEMBL cdna:known chromosome:CEL140:V:16535520:16536666:-1 gene:F36D3.9 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:16535585-16536666(-) 100.0 100.0
Public Domain and Genome References
Gene Title cysteine protease
Gene Symbol cpr-2
Ensembl F36D3.9
Entrez Gene 185355 Entrez gene
SwissProt O45466 EMBL-EBI
WormBase CE30347 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6508 proteolysis inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4197 cysteine-type endopeptidase activity inferred from electronic annotation QuickGO AmiGO
8234 cysteine-type peptidase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB04322 Hypothetical protein F36D3.9 [Caenorhabditis elegans] ref|NP_507186.2| Cysteine PRotease related family member (cpr-2) [Caenorhabditis elegans] 0.0
blast T20148 probable cysteine proteinase (EC 3.4.22.-) C52E4.1 - Caenorhabditis elegans 1.0E-120
blast CAB01410 Hypothetical protein C52E4.1 [Caenorhabditis elegans] ref|NP_506002.2| Cysteine PRotease related family member (cpr-1) [Caenorhabditis elegans] sp|P25807|CPR1_CAEEL Gut-specific cysteine proteinase precursor gb|AAB88058.1| gut-specific cysteine protease-1 [Caenorhabditis elegans] 1.0E-120
Protein Domains
Database ID Description E-Value
Pfam IPR000668 EMBL-EBI Peptidase C1A, papain 7.6E-111
Pfam IPR000668 EMBL-EBI Peptidase C1A, papain 2.9E-107
Pfam IPR000668 EMBL-EBI Peptidase C1A, papain 7.6E-111
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507186.2 1 21-40
F36D3.9 1 21-40
SNAP00000025155 1 21-40
Sequence
Target Sequence 
>C. ELEGANS:189469_AT
ccccaactgatctgctcacttgttgtggaatgtcatgcggagaaggatgtgacggaggat
tcccataccgagcattccaatggtgggctagacgtggtgtcgttactggaggagattacc
ttggtaccggttgcaagccatatccaataaggccatgtaatagtgataactgcgtaaacc
ttcaaactccaccgtgtagactgtcatgccaaccaggatacagaacgacctacaccaacg
acaagaactatggcagtaactccgcataccctgttccaagaaccgtcgctgctattcaag
ccgacatttattacaacggacctgttgtcgccgcgttcatagtatacgaggactttgaga
aatacaagagcggaatttacagacacatcgccggtagatcaaagggaggacacgctgtaa
agctaattggctggggaacagagaggggaaccccatattggctcgctgtcaactcttggg
gatcccagtggggtgaaagcggaacattccgaatcttgcgtggtgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCCCAACTGATCTGCTCACTTGTTG 401 261 476 Antisense
GTGACGGAGGATTCCCATACCGAGC 22 481 524 Antisense
TGGTACCGGTTGCAAGCCATATCCA 291 551 597 Antisense
TAACTGCGTAAACCTTCAAACTCCA 168 635 642 Antisense
CTCCACCGTGTAGACTGTCATGCCA 295 235 662 Antisense
TACAGAACGACCTACACCAACGACA 686 641 694 Antisense
ACTATGGCAGTAACTCCGCATACCC 384 101 722 Antisense
AACCGTCGCTGCTATTCAAGCCGAC 493 147 756 Antisense
ATTACAACGGACCTGTTGTCGCCGC 328 13 785 Antisense
TTGTCGCCGCGTTCATAGTATACGA 69 709 800 Antisense
GAACATTCCGAATCTTGCGTGGTGT 445 351 977 Antisense
Sequence Source Affymetrix Proprietary Database