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[189467_at]

Description F09E5.2 /REP_DB=WormBase Gene ID /WP=CE02609 /TR=Q19265 /GB=AAA79342.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=AHPC-TSA protein
Cluster 6grp_highest_10_10 > 05      6grp_high1_10_10 > 50      4grp_highest_8_8 > 16      4grp_high_8_8 > 52      6grp_highest_nonorm > 18      6grp_total > 51      4grp_total > 59      6grp_highest_sub > 03_04      6grp_cgc > 83      6grp_high1_sub > 03_04      6grp_cgc_sub > 03      6grp_total_sub > Hat      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7326
1 2 3 4 range
A 14032.7
(0.9)
P 		14782.8
(1.5)
P 		16534.3
(3)
P 		9391.7
(-3)
P 		7143
B 13844.9
(1.3)
P 		15107.6
(2.5)
P 		15622
(3)
P 		9449.3
(-3)
P 		6173
C 13003.4
(1)
P 		14847.9
(3)
P 		13295.7
(1.3)
P 		9208.1
(-3)
P 		5640
avr 13627
(1.4) 		14912.8
(2.8) 		15150.7
(3) 		9349.7
(-3) 		5801

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9792
1 2 3 4 5 6 range
A 17410.8
(1.5)
P 		14320.9
(-0.6)
P 		19589.7
(3)
P 		17536.2
(1.6)
P 		12864
(-1.6)
P 		10729.3
(-3)
P 		8860
B 13166.3
(-0.5)
P 		13603
(-0.1)
P 		16152.4
(2.2)
P 		17008.1
(3)
P 		11984.2
(-1.6)
P 		10425.2
(-3)
P 		6583
C 12562.7
(-1.1)
P 		13665.1
(-0.3)
P 		18422.3
(2.9)
P 		18521
(3)
P 		13628.6
(-0.4)
P 		9798.1
(-3)
P 		8723
avr 14379.9
(0.2) 		13863
(-0.3) 		18054.8
(3) 		17688.4
(2.7) 		12825.6
(-1.1) 		10317.5
(-3) 		7737
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3735
1 2 3 4 range
A 5109.3
(3)
P 		3209
(-0.1)
P 		4322.4
(1.7)
P 		1374.8
(-3)
P 		3735
B 4415
(3)
P 		3731.2
(1.3)
P 		3620
(1)
P 		2013.7
(-3)
P 		2401
C 4304.5
(2.4)
P 		4268.9
(2.3)
P 		4634
(3)
P 		1552.6
(-3)
P 		3081
avr 4609.6
(3) 		3736.4
(1.2) 		4192.1
(2.2) 		1647
(-3) 		2963

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2481
1 2 3 4 5 6 range
A 3209.5
(-1.6)
P 		5093.2
(3)
P 		4266.2
(1)
P 		4447.6
(1.4)
P 		3881.8
(0.1)
P 		2612.2
(-3)
P 		2481
B 4581.2
(1.2)
P 		4527.9
(0.9)
P 		3922.3
(-2.8)
P 		4504.9
(0.8)
P 		4869
(3)
P 		3887.5
(-3)
P 		982
C 4656.5
(2.9)
P 		4169.6
(0.8)
P 		4688.8
(3)
P 		3724.6
(-1.1)
P 		4410
(1.8)
P 		3280
(-3)
P 		1409
avr 4149.1
(1) 		4596.9
(3) 		4292.4
(1.6) 		4225.7
(1.3) 		4386.9
(2.1) 		3259.9
(-3) 		1337
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189467_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5733
Sequence Type Exemplar sequence
Representative Public ID F09E5.2 NCBI
Target Description F09E5.2 /REP_DB=WormBase Gene ID /WP=CE02609 /TR=Q19265 /GB=AAA79342.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=AHPC-TSA protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_182252(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_182252 NCBI Caenorhabditis elegans PeRoxireDoXin family member (prdx-2) (prdx-2) mRNA, complete cds. 11/11 None
SNAP00000044021 ENSEMBL cdna:SNAP chromosome:CEL140:II:5378812:5379463:1 11/11 None
GENEFINDER00000044034 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:5375238:5379463:1 11/11 None
F09E5.15.3 ENSEMBL cdna:known chromosome:CEL140:II:5378806:5379602:1 gene:F09E5.15 11/11 None
F09E5.15.2 ENSEMBL cdna:known chromosome:CEL140:II:5378810:5379602:1 gene:F09E5.15 11/11 None
F09E5.15.1 ENSEMBL cdna:known chromosome:CEL140:II:5378812:5379602:1 gene:F09E5.15 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:5375235-5379461(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol prdx-2
Ensembl F09E5.15
Entrez Gene 266858 Entrez gene
SwissProt Q8IG31 EMBL-EBI
WormBase CE32361 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:250733_AT 2-cys peroxiredoxin, chloroplast, putative at
CANINE:1601261_X_AT similar to peroxiredoxin 1 cfa
CANINE:1583176_AT similar to peroxiredoxin 1 cfa
CANINE_2:CFA.4507.1.A1_AT similar to peroxiredoxin 1 cfa
CANINE_2:CFAAFFX.7806.1.S1_S_AT similar to peroxiredoxin 1 cfa
CHICKEN:GGA.5204.2.S1_A_AT peroxiredoxin 1 gga
HG-U133_PLUS_2:208680_AT peroxiredoxin 1 hs
HG-U133A_2:208680_AT peroxiredoxin 1 hs
HG-U133A:208680_AT peroxiredoxin 1 hs
HG-FOCUS:208680_AT peroxiredoxin 1 hs
HG-U95AV2:41213_AT peroxiredoxin 1 hs
HUGENEFL:X67951_AT peroxiredoxin 1 hs
U133_X3P:G440305_3P_S_AT peroxiredoxin 1 hs
MOE430A:1416000_A_AT peroxiredoxin 1 mm
MOUSE430A_2:1416000_A_AT peroxiredoxin 1 mm
MOUSE430_2:1416000_A_AT peroxiredoxin 1 mm
MU11KSUBA:D16142_F_AT peroxiredoxin 1 mm
MU11KSUBB:MSA.354.0_F_AT peroxiredoxin 1 mm
MG-U74AV2:97758_AT peroxiredoxin 1 mm
MG-U74AV2:97055_S_AT peroxiredoxin 1 mm
MG-U74CV2:136105_AT peroxiredoxin 1 mm
MOE430A:1434731_X_AT peroxiredoxin 1 mm
MOUSE430A_2:1434731_X_AT peroxiredoxin 1 mm
MOUSE430_2:1434731_X_AT peroxiredoxin 1 mm
MOE430A:1433866_X_AT peroxiredoxin 1 mm
MOUSE430A_2:1433866_X_AT peroxiredoxin 1 mm
MOUSE430_2:1433866_X_AT peroxiredoxin 1 mm
MOE430A:1436691_X_AT peroxiredoxin 1 mm
MOUSE430A_2:1436691_X_AT peroxiredoxin 1 mm
MOUSE430_2:1436691_X_AT peroxiredoxin 1 mm
MU19KSUBA:TC15382_F_AT Peroxiredoxin 1 (Prdx1), mRNA mm
MU19KSUBA:TC15383_AT Peroxiredoxin 1 (Prdx1), mRNA mm
MU19KSUBA:TC15384_AT Peroxiredoxin 1 (Prdx1), mRNA mm
MU19KSUBA:TC21802_AT Peroxiredoxin 1 (Prdx1), mRNA mm
RG-U34A:RC_AI010083_AT peroxiredoxin 1 rn
RAE230A:1367613_AT peroxiredoxin 1 rn
RAT230_2:1367613_AT peroxiredoxin 1 rn
YEAST_2:1771624_AT Stress inducible cytoplasmic thioredoxin peroxidase; cooperates with Tsa1p in the removal of reactive oxygen, nitrogen and sulfur species using thioredoxin as hydrogen donor; deletion enhances the mutator phenotype of tsa1 mutants Sc
Protein Similarities
Method ID Description E-Value
blast T16005 hypothetical protein F09E5.2 - Caenorhabditis elegans 0.0
blast CAE59088 Hypothetical protein CBG02380 [Caenorhabditis briggsae] 0.0
blast AAN63415 Hypothetical protein F09E5.2 [Caenorhabditis elegans] ref|NP_495010.2| F09E5.2 [Caenorhabditis elegans] 0.0
blast AAN63412 Temporarily assigned gene name protein 56 [Caenorhabditis elegans] ref|NP_872052.1| PeRoxireDoXin family member (prdx-2) [Caenorhabditis elegans] 1.0E-110
blast T16005 hypothetical protein F09E5.2 - Caenorhabditis elegans 1.0E-110
Protein Domains
Database ID Description E-Value
Pfam IPR000866 EMBL-EBI Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen 3.4E-84
Pfam IPR000866 EMBL-EBI Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen 3.4E-84
Pfam IPR001296 EMBL-EBI Glycosyl transferase, group 1 1.6E-52
Sequence
Target Sequence 
>C. ELEGANS:189467_AT
tgtttcgctctctgactacaagggaaaatacgttgtgctcttcttctacccacttgactt
cactttcgtgtgcccaaccgagattatcgccttctctgaccgtgctgaggagttcaaggc
tatcaacaccgttgtgctcgccgcttccaccgactctgtcttctctcacttggcatggat
caaccagccacgcaagcacggaggactcggagagatgaacattccagttctcgctgacac
caaccaccaaatctcccgtgattacggagttctcaaggaggacgaaggaattgctttccg
tggactcttcatcatcgacccatcacaaaacctccgtcaaatcaccatcaatgatcttcc
agtcggacgctctgttgatgagactcttcgtcttgttcaggccttccagttcgtcgagaa
gcacggagaggtttgcccagctggatggactccaggatccgacacc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGTTTCGCTCTCTGACTACAAGGGA 476 559 1230 Antisense
CCACTTGACTTCACTTTCGTGTGCC 470 273 1279 Antisense
CAACCGAGATTATCGCCTTCTCTGA 499 187 1304 Antisense
CCTTCTCTGACCGTGCTGAGGAGTT 502 269 1319 Antisense
TCTTCTCTCACTTGGCATGGATCAA 186 617 1388 Antisense
TGAACATTCCAGTTCTCGCTGACAC 443 573 1445 Antisense
AGGAATTGCTTTCCGTGGACTCTTC 172 55 1515 Antisense
TTCCAGTCGGACGCTCTGTTGATGA 206 701 1586 Antisense
ATGAGACTCTTCGTCTTGTTCAGGC 80 47 1607 Antisense
GGCCTTCCAGTTCGTCGAGAAGCAC 685 541 1629 Antisense
TGGATGGACTCCAGGATCCGACACC 625 549 1671 Antisense
Sequence Source Affymetrix Proprietary Database