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[189462_s_at]

Description C38C10.5A /REP_DB=WormBase Gene ID /WP=CE20550 /TR=SW:Q03570 /GB=CAA82366.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=RGR1 (yeast)
Cluster 6grp_highest_10_10 > 64      6grp_high1_10_10 > 46      4grp_highest_8_8 > 42      4grp_high_8_8 > 40      6grp_highest_nonorm > 83      6grp_total > 46      4grp_total > 54      6grp_highest_sub > Cu      6grp_cgc > 26      6grp_high1_sub > Cu      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 504
1 2 3 4 range
A 656
(3)
P 		273.1
(-1.6)
P 		425.9
(0.3)
P 		152.2
(-3)
P 		504
B 656.6
(3)
P 		287.3
(-2.1)
P 		263
(-2.5)
P 		223.9
(-3)
P 		433
C 640.1
(3)
P 		363.6
(-1.3)
P 		296.3
(-2.3)
P 		250.7
(-3)
P 		389
avr 650.9
(3) 		308
(-1.7) 		328.4
(-1.4) 		208.9
(-3) 		442

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 292
1 2 3 4 5 6 range
A 459.8
(0.5)
P 		455.9
(0.4)
P 		427
(-0.4)
P 		432
(-0.3)
P 		332.3
(-3)
P 		552.7
(3)
P 		220
B 501.2
(2.8)
P 		469
(1.7)
P 		373
(-1.5)
P 		443.4
(0.9)
P 		327.8
(-3)
P 		507.1
(3)
P 		179
C 515.2
(2.7)
P 		530
(3)
P 		470.6
(1.7)
P 		420.1
(0.6)
P 		260.4
(-3)
P 		471
(1.7)
P 		270
avr 492.1
(2.5) 		485
(2.3) 		423.5
(0.4) 		431.8
(0.7) 		306.8
(-3) 		510.3
(3) 		204
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 217
1 2 3 4 range
A 238.9
(3)
P 		59.3
(-2)
P 		111.3
(-0.5)
P 		22.3
(-3)
P 		217
B 209.4
(3)
P 		71
(-2.1)
P 		60.9
(-2.5)
P 		47.7
(-3)
P 		162
C 211.9
(3)
P 		104.5
(-0.8)
P 		103.3
(-0.8)
P 		42.3
(-3)
P 		170
avr 220.1
(3) 		78.3
(-1.7) 		91.8
(-1.2) 		37.4
(-3) 		183

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 107
1 2 3 4 5 6 range
A 84.8
(-3)
P 		162.2
(3)
P 		93
(-2.4)
P 		109.6
(-1.1)
P 		100.3
(-1.8)
P 		134.6
(0.9)
P 		77
B 174.4
(2.1)
P 		156.1
(1)
P 		90.6
(-3)
P 		117.4
(-1.4)
P 		133.2
(-0.4)
P 		189.1
(3)
P 		99
C 191
(3)
P 		161.7
(1.4)
P 		119.8
(-1)
P 		84.5
(-3)
P 		84.3
(-3)
P 		157.7
(1.1)
P 		107
avr 150.1
(1.9) 		160
(2.9) 		101.1
(-3) 		103.8
(-2.7) 		105.9
(-2.5) 		160.5
(3) 		59
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 189462_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6271
Sequence Type Exemplar sequence
Representative Public ID C38C10.5A NCBI
Target Description C38C10.5A /REP_DB=WormBase Gene ID /WP=CE20550 /TR=SW:Q03570 /GB=CAA82366.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=RGR1 (yeast)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066667(11), NM_066666(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066667 NCBI Caenorhabditis elegans RGR (yeast transcriptional mediator complex) homolog family member (rgr-1) (rgr-1) mRNA, complete cds. 11/11 None
NM_066666 NCBI Caenorhabditis elegans RGR (yeast transcriptional mediator complex) homolog family member (rgr-1) (rgr-1) mRNA, complete cds. 11/11 None
C38C10.5a ENSEMBL cdna:known chromosome:CEL140:III:9394042:9404410:1 gene:C38C10.5 11/11 None
C38C10.5b ENSEMBL cdna:known chromosome:CEL140:III:9394042:9404255:1 gene:C38C10.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000004826 5/11 Cross Hyb Matching Probes None
SNAP00000004811 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:9394037-9404251(+) 100.0 100.0
Public Domain and Genome References
Ensembl C38C10.5
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA82366 Hypothetical protein C38C10.5a [Caenorhabditis elegans] emb|CAA79551.2| Hypothetical protein C38C10.5a [Caenorhabditis elegans] ref|NP_499068.2| RGR (yeast transcriptional mediator complex) homolog family member (rgr-1) [Caenorhabditis elegans] 0.0
blast CAA82365 Hypothetical protein C38C10.5b [Caenorhabditis elegans] emb|CAA79550.2| Hypothetical protein C38C10.5b [Caenorhabditis elegans] ref|NP_499067.2| RGR (yeast transcriptional mediator complex) homolog family member (rgr-1) [Caenorhabditis elegans] sp|Q03570|MED14_CAEEL RNA polymerase II mediator complex subunit 14 (Mediator complex subunit rgr-1) 0.0
blast CAE65222 Hypothetical protein CBG10098 [Caenorhabditis briggsae] 0.0
Sequence
Target Sequence 
>C. ELEGANS:189462_S_AT
ttggaatctggtgcgtctcgttatggatcgattcaactcgggcgactggaatcctggaaa
ccgagatgaacctatcatttcgagtgttgctccgccgacatacgttaaccctggatcagt
agctggaccgagctcggtggccgcgcccggatcagtttcaatacaacaacctggatcagt
tctgcaaccaggttcaatgatgggtcctcaatctgtaaatgctcttcaatatgggatgca
tcggcaaccaatgggtggtccacaatcaatgcaaatgaatccatcaagcgtcggacaacc
tggcagtgtaggaggtcctggaagccatcaacagcacatgatgaatccgggaagcgtcgg
acctggaagcgttggtggaccaggaagtgtgaatcctggaagtgtaggatatccacaatg
gaatccaccatcagttggccaatcatatcatcatcct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTGGAATCTGGTGCGTCTCGTTATG 654 697 3684 Antisense
TCAACTCGGGCGACTGGAATCCTGG 354 631 3716 Antisense
CTATCATTTCGAGTGTTGCTCCGCC 68 225 3755 Antisense
CCGACATACGTTAACCCTGGATCAG 16 263 3778 Antisense
GATCAGTAGCTGGACCGAGCTCGGT 204 415 3797 Antisense
GGATCAGTTCTGCAACCAGGTTCAA 155 511 3856 Antisense
GGTCCTCAATCTGTAAATGCTCTTC 119 501 3886 Antisense
ATCAAGCGTCGGACAACCTGGCAGT 391 27 3966 Antisense
GGTCCTGGAAGCCATCAACAGCACA 104 503 3997 Antisense
AAGCGTCGGACCTGGAAGCGTTGGT 344 145 4035 Antisense
AGTTGGCCAATCATATCATCATCCT 320 65 4116 Antisense
Sequence Source Affymetrix Proprietary Database