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[189461_at] cytochrome P450

Description B0213.12 /REP_DB=WormBase Gene ID /WP=CE16783 /TR=O44657 /GB=AAC47937.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=cytochrome P450
Cluster 6grp_high1_10_10 > 56      6grp_total > 35      4grp_total > 23      6grp_cgc > 06      6grp_high1_sub > Cu      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 76
1 2 3 4 range
A 102.1
(2.3)
A 		52.5
(-1.6)
A 		35.1
(-3)
A 		110.7
(3)
P 		76
B 108.1
(3)
P 		67.2
(-0.8)
A 		73.9
(-0.2)
A 		44
(-3)
P 		64
C 94.5
(1.7)
A 		53.8
(-2.3)
A 		46.5
(-3)
A 		108.2
(3)
P 		62
avr 101.6
(3) 		57.8
(-2.3) 		51.8
(-3) 		87.6
(1.3) 		50

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 100
1 2 3 4 5 6 range
A 110.5
(3)
M 		44.7
(-3)
P 		96.6
(1.7)
P 		66.1
(-1)
P 		68.1
(-0.9)
P 		83.9
(0.6)
P 		66
B 85.9
(3)
A 		60.6
(-0.8)
M 		67.8
(0.3)
P 		49.7
(-2.5)
P 		46.1
(-3)
P 		50.9
(-2.3)
A 		40
C 63.8
(0.6)
P 		98.5
(3)
P 		34.8
(-1.3)
P 		28.3
(-1.8)
A 		10.3
(-3)
A 		55
(0)
A 		88
avr 86.7
(3) 		67.9
(0.5) 		66.4
(0.3) 		48
(-2.1) 		41.5
(-3) 		63.3
(-0.1) 		45
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 28
1 2 3 4 range
A 37.2
(3)
A 		11.4
(-2.5)
A 		9.2
(-3)
A 		16.2
(-1.5)
P 		28
B 34.5
(3)
P 		16.6
(-1.3)
A 		17.1
(-1.2)
A 		9.4
(-3)
P 		25
C 31.3
(3)
A 		15.5
(-3)
A 		16.2
(-2.7)
A 		18.2
(-2)
P 		16
avr 34.3
(3) 		14.5
(-2.9) 		14.2
(-3) 		14.6
(-2.9) 		20

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 27
1 2 3 4 5 6 range
A 20.4
(2.3)
M 		15.9
(-3)
P 		21
(3)
P 		16.8
(-1.9)
P 		20.6
(2.5)
P 		20.4
(2.3)
P 		5
B 29.9
(3)
A 		20.2
(-0.5)
M 		16.5
(-1.8)
P 		13.2
(-3)
P 		18.7
(-1)
P 		19
(-0.9)
A 		17
C 23.7
(1.6)
P 		30
(3)
P 		8.9
(-1.7)
P 		5.7
(-2.5)
A 		3.3
(-3)
A 		18.4
(0.4)
A 		27
avr 24.7
(3) 		22
(1.7) 		15.5
(-1.3) 		11.9
(-3) 		14.2
(-1.9) 		19.3
(0.5) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189461_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15764
Sequence Type Exemplar sequence
Representative Public ID B0213.12 NCBI
Target Description B0213.12 /REP_DB=WormBase Gene ID /WP=CE16783 /TR=O44657 /GB=AAC47937.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=cytochrome P450
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071700(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071700 NCBI Caenorhabditis elegans CYtochrome P450 family member (cyp-34A7) (cyp-34A7) mRNA, complete cds. 11/11 None
SNAP00000025852 ENSEMBL cdna:SNAP chromosome:CEL140:V:3961573:3963628:-1 11/11 None
GENEFINDER00000025878 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:3961573:3963628:-1 11/11 None
B0213.12 ENSEMBL cdna:known chromosome:CEL140:V:3961573:3963628:-1 gene:B0213.12 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:3961572-3963628(-) 100.0 100.0
Public Domain and Genome References
Gene Title cytochrome P450
Gene Symbol cyp-34A7
Ensembl B0213.12
Entrez Gene 181849 Entrez gene
SwissProt O44657 EMBL-EBI
WormBase CE16783 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATGENOME1:17844_AT cytochrome P450 family protein at
ATH1-121501:267626_AT cytochrome P450 family protein at
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4497 monooxygenase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC47937 Cytochrome p450 family protein 34A7 [Caenorhabditis elegans] ref|NP_504101.1| CYtochrome P450 family member (cyp-34A7) [Caenorhabditis elegans] 0.0
blast AAC47936 Cytochrome p450 family protein 34A6 [Caenorhabditis elegans] ref|NP_504100.2| CYtochrome P450 family member (cyp-34A6) [Caenorhabditis elegans] 0.0
blast AAC47938 Cytochrome p450 family protein 34A8 [Caenorhabditis elegans] ref|NP_504102.1| CYtochrome P450 family member (cyp-34A8) [Caenorhabditis elegans] 0.0
Protein Families
Method ID Description E-Value
p450 CP1B_MOUSE Animalia; CYP1B-1; mou; CP1B_MOUSE; Mus musculus; Q64429 1.0E-156
Protein Domains
Database ID Description E-Value
Pfam IPR001128 EMBL-EBI Cytochrome P450 1.2E-89
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504101.1 1 2-19
B0213.12 1 2-19
SNAP00000025852 1 2-19
GENEFINDER00000025878 1 2-19
Sequence
Target Sequence 
>C. ELEGANS:189461_AT
agttttactctcgagacacttgccgtcgacttgtttgatttgtggcaggctggtcaggag
accacatcgacaactttgacctgggcgtgtgcgtgcctgttgaatcacccagaagttgtg
gagaagctcagaaaagagctgacagaagttaccggtggagcacgtggagtctcccttacg
gacagaaccaagactccatatttgaatgctactattaatgaagttcaacgaatctcatca
attctcaacgtcaacttactacgcattttggaagaagatgcagtaattgatggacaccct
gtgccagctggaacagcttttactacccagcttgccttgctacatactgacgaggaaacg
ttcaaaaatcacaaagaattcattccggaaagattccttgaaaataataacttagagaag
agactgattccatttggaattggaaaacgatcttgccctggagaatcgctcgcaaaagct
gagctgtatttgattatcggaaatctcgtcatagatttcgatttgaagccagttggggcc
attccaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGTTTTACTCTCGAGACACTTGCCG 353 63 886 Antisense
ACTTGCCGTCGACTTGTTTGATTTG 625 103 903 Antisense
AGACCACATCGACAACTTTGACCTG 649 69 944 Antisense
CGTGCCTGTTGAATCACCCAGAAGT 294 245 977 Antisense
CAACGTCAACTTACTACGCATTTTG 289 187 1131 Antisense
TAATTGATGGACACCCTGTGCCAGC 169 633 1169 Antisense
GAACAGCTTTTACTACCCAGCTTGC 366 351 1196 Antisense
CTTGCCTTGCTACATACTGACGAGG 203 219 1216 Antisense
ATTGGAAAACGATCTTGCCCTGGAG 173 3 1324 Antisense
TGCCCTGGAGAATCGCTCGCAAAAG 314 585 1339 Antisense
TGAAGCCAGTTGGGGCCATTCCAAA 581 573 1409 Antisense
Sequence Source Affymetrix Proprietary Database