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[189457_at] cytochrome P450

Description B0213.15 /REP_DB=WormBase Gene ID /WP=CE16785 /TR=O44659 /GB=AAC47939.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=cytochrome P450
Cluster 6grp_highest_10_10 > 68      6grp_high1_10_10 > 95      6grp_highest_nonorm > 94      6grp_total > 86      4grp_total > 02      6grp_highest_sub > In      6grp_cgc > 67      6grp_high1_sub > In      6grp_cgc_sub > In      6grp_total_sub > Increase      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1193
1 2 3 4 range
A 231.8
(-2.4)
P 		148.1
(-3)
A 		234.3
(-2.4)
A 		997.4
(3)
P 		849
B 185.6
(-3)
P 		187.8
(-3)
A 		258.1
(-2.6)
M 		1327.3
(3)
P 		1142
C 187.4
(-3)
P 		221.1
(-2.8)
M 		241.8
(-2.7)
P 		1340.9
(3)
P 		1154
avr 201.6
(-2.9) 		185.7
(-3) 		244.7
(-2.7) 		1221.9
(3) 		1036

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1080
1 2 3 4 5 6 range
A 156.7
(-3)
P 		227.4
(-2.4)
P 		300
(-1.9)
P 		721.6
(1.4)
P 		519.9
(-0.2)
P 		924.4
(3)
P 		768
B 212.8
(-3)
P 		224.3
(-2.9)
P 		376.2
(-1.9)
P 		512.2
(-1)
P 		573.9
(-0.6)
P 		1110.2
(3)
P 		897
C 269.8
(-2.6)
P 		208.8
(-3)
P 		318.2
(-2.4)
P 		635.2
(-0.5)
P 		510.5
(-1.2)
P 		1236.3
(3)
P 		1028
avr 213.1
(-3) 		220.2
(-3) 		331.5
(-2.2) 		623
(-0.2) 		534.8
(-0.8) 		1090.3
(3) 		877
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 251
1 2 3 4 range
A 84.4
(-0.2)
P 		32.1
(-3)
A 		61.3
(-1.5)
A 		146
(3)
P 		114
B 59.2
(-2.7)
P 		46.4
(-3)
A 		59.8
(-2.7)
M 		282.8
(3)
P 		236
C 62
(-3)
P 		63.6
(-2.9)
M 		84.3
(-2.2)
P 		226.1
(3)
P 		164
avr 68.5
(-2.3) 		47.4
(-3) 		68.5
(-2.3) 		218.3
(3) 		171

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 385
1 2 3 4 5 6 range
A 28.9
(-3)
P 		80.9
(-1.4)
P 		65.3
(-1.9)
P 		183
(1.7)
P 		156.9
(0.9)
P 		225.1
(3)
P 		196
B 74
(-3)
P 		74.7
(-3)
P 		91.4
(-2.7)
P 		135.7
(-1.9)
P 		233.2
(-0.2)
P 		414
(3)
P 		340
C 100
(-2.4)
P 		63.7
(-3)
P 		81
(-2.7)
P 		127.7
(-1.9)
P 		165.2
(-1.3)
P 		413.8
(3)
P 		350
avr 67.6
(-3) 		73.1
(-2.9) 		79.2
(-2.8) 		148.8
(-1.3) 		185.1
(-0.5) 		351
(3) 		283
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189457_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14813
Sequence Type Exemplar sequence
Representative Public ID B0213.15 NCBI
Target Description B0213.15 /REP_DB=WormBase Gene ID /WP=CE16785 /TR=O44659 /GB=AAC47939.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=cytochrome P450
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071702(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071702 NCBI Caenorhabditis elegans CYtochrome P450 family member (cyp-34A9) (cyp-34A9) mRNA, complete cds. 11/11 None
SNAP00000025854 ENSEMBL cdna:SNAP chromosome:CEL140:V:3968047:3970297:-1 11/11 None
B0213.15 ENSEMBL cdna:known chromosome:CEL140:V:3967958:3970327:-1 gene:B0213.15 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000025874 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:3968046-3970297(-) 100.0 100.0
Public Domain and Genome References
Gene Title cytochrome P450
Gene Symbol cyp-34A9
Ensembl B0213.15
Entrez Gene 181851 Entrez gene
SwissProt O44659 EMBL-EBI
WormBase CE30582 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:260233_AT cytochrome P450, putative at
MG-U74AV2:102690_AT cytochrome P450, family 2, subfamily b, polypeptide 19 mm
MOE430A:1419731_AT cytochrome P450, family 2, subfamily b, polypeptide 19 mm
MOUSE430A_2:1419731_AT cytochrome P450, family 2, subfamily b, polypeptide 19 mm
MOUSE430_2:1419731_AT cytochrome P450, family 2, subfamily b, polypeptide 19 mm
MU19KSUBA:TC15862_AT Cytochrome P450, family 2, subfamily b, polypeptide 19 (Cyp2b19), mRNA mm
RAE230A:1387722_AT cytochrome P450, family 2, subfamily b, polypeptide 15 rn
RAT230_2:1387722_AT cytochrome P450, family 2, subfamily b, polypeptide 15 rn
RT-U34:X63545_AT cytochrome P450, family 2, subfamily b, polypeptide 15 rn
RG-U34A:X63545_AT cytochrome P450, family 2, subfamily b, polypeptide 15 rn
RT-U34:D17349CDS_F_AT cytochrome P450, family 2, subfamily b, polypeptide 15 rn
RG-U34A:D17349CDS_F_AT cytochrome P450, family 2, subfamily b, polypeptide 15 rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4497 monooxygenase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC47939 Cytochrome p450 family protein 34A9 [Caenorhabditis elegans] ref|NP_504103.2| CYtochrome P450 family member (cyp-34A9) [Caenorhabditis elegans] 0.0
blast CAE58178 Hypothetical protein CBG01270 [Caenorhabditis briggsae] 0.0
blast AAC47937 Cytochrome p450 family protein 34A7 [Caenorhabditis elegans] ref|NP_504101.1| CYtochrome P450 family member (cyp-34A7) [Caenorhabditis elegans] 0.0
Protein Families
Method ID Description E-Value
p450 CP1B_MOUSE Animalia; CYP1B-1; mou; CP1B_MOUSE; Mus musculus; Q64429 1.0E-160
p450 CP1B_MOUSE Animalia; CYP1B-1; mou; CP1B_MOUSE; Mus musculus; Q64429 1.0E-162
Protein Domains
Database ID Description E-Value
Pfam IPR001128 EMBL-EBI Cytochrome P450 3.9E-88
Pfam IPR001128 EMBL-EBI Cytochrome P450 4.3E-83
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504103.2 1 2-19
B0213.15 1 2-19
SNAP00000025854 1 2-19
Sequence
Target Sequence 
>C. ELEGANS:189457_AT
tgtgcctgtcttttaaattacccggaagttgttaaagaaattagaaaagaattgacagag
gttaccggtggaacgcgaagtctatcactaaccgataggccaaagacgccatacttgggc
gcaactatcaatgtaggtgttagccattattttgaaatttctgaaatccaaagaatcgct
tcaattctaaacgtcaacattttccgcctaatggaggaggactcgatcattgaggggcag
ccaatatctgctggagccgttttgactactcaacttgccatgcttcataccgatgagaag
acgttcaaaaatcacacagagttccgacctgaaagatttttggaaaataataatctggaa
aaacggctgattccatttggcatcgggaagagatcttgtcttggcgaatcactggctaga
gctgagctgtatttggctagtgaaatgtgtgtttttgatactttaaatgagtttttttct
tttcagataacaggaaatatgattttggatttcgattttgaatcggttggtgctgcccca
agaattcaaacaccaactccgtttgcactaatgaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGTGCCTGTCTTTTAAATTACCCGG 276 557 973 Antisense
GAACGCGAAGTCTATCACTAACCGA 634 345 1043 Antisense
GCCATACTTGGGCGCAACTATCAAT 706 275 1080 Antisense
TCTAAACGTCAACATTTTCCGCCTA 405 1 1158 Antisense
GCTGGAGCCGTTTTGACTACTCAAC 98 295 1222 Antisense
TACTCAACTTGCCATGCTTCATACC 108 645 1239 Antisense
ACGGCTGATTCCATTTGGCATCGGG 596 93 1335 Antisense
GATCTTGTCTTGGCGAATCACTGGC 654 419 1364 Antisense
ATTTTGAATCGGTTGGTGCTGCCCC 414 13 1487 Antisense
GTGCTGCCCCAAGAATTCAAACACC 466 479 1502 Antisense
CACCAACTCCGTTTGCACTAATGAA 351 203 1523 Antisense
Sequence Source Affymetrix Proprietary Database