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[189454_at] Zinc finger-like

Description ZK177.3 /REP_DB=WormBase Gene ID /WP=CE02092 /TR=Q09659 /GB=AAG00046.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=Zinc finger-like
Cluster 6grp_total > 21      4grp_total > 20      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 80
1 2 3 4 range
A 41.3
(-1)
A 		42.1
(-0.9)
A 		17.4
(-3)
A 		89.6
(3)
P 		72
B 38.7
(0.4)
A 		48.2
(1.5)
A 		9.8
(-3)
A 		61.4
(3)
A 		52
C 62.1
(0.6)
A 		33.8
(-1.9)
A 		21.1
(-3)
A 		89.9
(3)
A 		69
avr 47.4
(-0.1) 		41.4
(-0.6) 		16.1
(-3) 		80.3
(3) 		64

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 93
1 2 3 4 5 6 range
A 81.1
(1.7)
A 		58.1
(0.2)
A 		100.8
(3)
P 		7.7
(-3)
A 		57.5
(0.2)
A 		10.8
(-2.8)
A 		93
B 9
(-3)
A 		32.5
(-0.6)
A 		60.5
(2.2)
A 		16.4
(-2.3)
A 		68.9
(3)
A 		24.1
(-1.5)
A 		60
C 39.2
(-1.8)
A 		83.3
(3)
P 		28.3
(-3)
A 		48.8
(-0.8)
A 		37.9
(-2)
A 		43
(-1.4)
A 		55
avr 43.1
(-0.1) 		58
(2.2) 		63.2
(3) 		24.3
(-3) 		54.8
(1.7) 		26
(-2.7) 		39
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 15
(3)
A 		9.1
(-0.4)
A 		4.6
(-3)
A 		13.1
(1.9)
P 		10
B 12.3
(2.6)
A 		11.9
(2.3)
A 		2.3
(-3)
A 		13.1
(3)
A 		11
C 20.6
(3)
A 		9.7
(-2)
A 		7.4
(-3)
A 		15.2
(0.5)
A 		13
avr 16
(3) 		10.2
(-0.1) 		4.8
(-3) 		13.8
(1.8) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 26
1 2 3 4 5 6 range
A 15
(0.9)
A 		20.7
(2.6)
A 		22
(3)
P 		1.9
(-3)
A 		17.3
(1.6)
A 		2.6
(-2.8)
A 		20
B 3.1
(-3)
A 		10.8
(-1.1)
A 		14.7
(-0.2)
A 		4.3
(-2.7)
A 		28
(3)
A 		9
(-1.6)
A 		25
C 14.5
(-0.6)
A 		25.4
(3)
P 		7.2
(-3)
A 		9.8
(-2.1)
A 		12.3
(-1.3)
A 		14.4
(-0.6)
A 		18
avr 10.9
(-0.6) 		19
(2.9) 		14.6
(1) 		5.3
(-3) 		19.2
(3) 		8.7
(-1.5) 		14
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189454_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4845
Sequence Type Exemplar sequence
Representative Public ID ZK177.3 NCBI
Target Description ZK177.3 /REP_DB=WormBase Gene ID /WP=CE02092 /TR=Q09659 /GB=AAG00046.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=Zinc finger-like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062655(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062655 NCBI Caenorhabditis elegans ZK177.3 (ZK177.3) mRNA, complete cds. 11/11 None
SNAP00000012886 ENSEMBL cdna:SNAP chromosome:CEL140:II:5516164:5517103:1 11/11 None
ZK177.3 ENSEMBL cdna:known chromosome:CEL140:II:5515831:5517103:1 gene:ZK177.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000012898 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:5515828-5517101(+) 100.0 100.0
Public Domain and Genome References
Gene Title Zinc finger-like
Ensembl ZK177.3
Entrez Gene 191237 Entrez gene
SwissProt Q09659 EMBL-EBI
WormBase CE02092 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3676 nucleic acid binding inferred from electronic annotation QuickGO AmiGO
8270 zinc ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAG00046 Hypothetical protein ZK177.3 [Caenorhabditis elegans] ref|NP_495056.1| ZK177.3 [Caenorhabditis elegans] 1.0E-126
blast AAG00046 Hypothetical protein ZK177.3 [Caenorhabditis elegans] ref|NP_495056.1| ZK177.3 [Caenorhabditis elegans] 3.0E-99
blast CAE59126 Hypothetical protein CBG02421 [Caenorhabditis briggsae] 7.0E-12
Sequence
Target Sequence 
>C. ELEGANS:189454_AT
cattatcacggccacattcgtcagtcaaatgtcatccactgtccatattgcaaaaagaag
aaaacgttcaaaagcaggaacaatttgatggtacatgttcaccattatcatcccacgcat
ataaacgaaatgaagcaggcaaacttggaaagtgctaaagaagaaaaaatgaagacaatg
ttggaaaagcaagcaaaagaagcacacgaattcgaaatttcacaaccagcggtatttgaa
aaggatttcgcgagttatgatctaccgatgttttctcaatgccctccaatgaacgggatt
ccagtatcaactccaattgaatatccttattctcaaaatccttatcaagatcacacacca
tttgatagctatccctacccaaatttccacccacaacagctcccactgccaactttcgag
aacaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CATTATCACGGCCACATTCGTCAGT 708 215 175 Antisense
ATTCGTCAGTCAAATGTCATCCACT 551 9 190 Antisense
TGTCATCCACTGTCCATATTGCAAA 320 559 204 Antisense
TACATGTTCACCATTATCATCCCAC 140 645 266 Antisense
GGATTTCGCGAGTTATGATCTACCG 49 511 417 Antisense
GATCTACCGATGTTTTCTCAATGCC 11 421 433 Antisense
TTCTCAATGCCCTCCAATGAACGGG 302 689 447 Antisense
GAACGGGATTCCAGTATCAACTCCA 331 347 465 Antisense
AATCCTTATCAAGATCACACACCAT 243 167 511 Antisense
CCATTTGATAGCTATCCCTACCCAA 298 271 532 Antisense
CCCACTGCCAACTTTCGAGAACAAT 85 259 576 Antisense
Sequence Source Affymetrix Proprietary Database