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[189451_s_at]

Description M01A8.2 /REP_DB=WormBase Gene ID /WP=CE03491 /TR=SW:P34531 /GB=CAA81607.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=CAP-Gly domain
Cluster 6grp_highest_10_10 > 41      6grp_high1_10_10 > 15      4grp_highest_8_8 > 49      4grp_high_8_8 > 41      6grp_highest_nonorm > 40      6grp_total > 15      4grp_total > 46      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 628
1 2 3 4 range
A 951.9
(3)
P 		526.2
(-1.5)
P 		526
(-1.5)
P 		383.2
(-3)
P 		569
B 851.6
(3)
P 		627.1
(-0.4)
P 		508.4
(-2.3)
P 		460.6
(-3)
P 		391
C 1010.9
(3)
P 		604.1
(-1.1)
P 		532.8
(-1.9)
P 		422.2
(-3)
P 		589
avr 938.1
(3) 		585.8
(-1.1) 		522.4
(-1.8) 		422
(-3) 		516

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 869
1 2 3 4 5 6 range
A 935.7
(2.4)
P 		1004.7
(3)
P 		551.7
(-0.9)
P 		535.6
(-1.1)
P 		496.9
(-1.4)
P 		312.6
(-3)
P 		692
B 1123
(3)
P 		970.4
(1.8)
P 		553.5
(-1.3)
P 		567.4
(-1.2)
P 		442.8
(-2.2)
P 		336.1
(-3)
P 		787
C 1181.2
(3)
P 		954.4
(1.4)
P 		652.1
(-0.7)
P 		418.1
(-2.3)
P 		471.2
(-1.9)
P 		316.1
(-3)
P 		865
avr 1080
(3) 		976.5
(2.2) 		585.8
(-0.9) 		507
(-1.5) 		470.3
(-1.8) 		321.6
(-3) 		758
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 291
1 2 3 4 range
A 346.6
(3)
P 		114.2
(-1.8)
P 		137.5
(-1.3)
P 		56.1
(-3)
P 		291
B 271.6
(3)
P 		154.9
(-1)
P 		117.8
(-2.3)
P 		98.2
(-3)
P 		173
C 334.6
(3)
P 		173.7
(-0.7)
P 		185.7
(-0.4)
P 		71.2
(-3)
P 		263
avr 317.6
(3) 		147.6
(-1.2) 		147
(-1.2) 		75.2
(-3) 		242

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 362
1 2 3 4 5 6 range
A 172.5
(-0.9)
P 		357.3
(3)
P 		120.1
(-2.1)
P 		135.8
(-1.7)
P 		149.9
(-1.4)
P 		76.1
(-3)
P 		281
B 390.8
(3)
P 		323
(1.5)
P 		134.4
(-2.8)
P 		150.3
(-2.4)
P 		179.9
(-1.8)
P 		125.3
(-3)
P 		266
C 437.8
(3)
P 		291.2
(0.5)
P 		166
(-1.6)
P 		84.1
(-3)
P 		152.5
(-1.8)
P 		105.8
(-2.6)
P 		354
avr 333.7
(3) 		323.8
(2.7) 		140.2
(-2) 		123.4
(-2.5) 		160.8
(-1.5) 		102.4
(-3) 		231
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 189451_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6121
Sequence Type Exemplar sequence
Representative Public ID M01A8.2 NCBI
Target Description M01A8.2 /REP_DB=WormBase Gene ID /WP=CE03491 /TR=SW:P34531 /GB=CAA81607.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=CAP-Gly domain
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001027512(11), NM_001027511(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001027512 NCBI Caenorhabditis elegans M01A8.2b (M01A8.2) mRNA, complete cds. 11/11 None
NM_001027511 NCBI Caenorhabditis elegans M01A8.2a (M01A8.2) mRNA, complete cds. 11/11 None
SNAP00000016676 ENSEMBL cdna:SNAP chromosome:CEL140:III:9260445:9262247:-1 11/11 None
GENEFINDER00000016679 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:9260445:9268964:-1 11/11 None
M01A8.2b ENSEMBL cdna:known chromosome:CEL140:III:9260101:9268964:-1 gene:M01A8.2 11/11 None
M01A8.2a ENSEMBL cdna:known chromosome:CEL140:III:9260445:9268964:-1 gene:M01A8.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:9260440-9268046(-) 99.14 99.14
Public Domain and Genome References
Ensembl M01A8.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAH19085 Hypothetical protein M01A8.2b [Caenorhabditis elegans] ref|NP_001022683.1| M01A8.2b [Caenorhabditis elegans] 0.0
blast CAA81607 Hypothetical protein M01A8.2a [Caenorhabditis elegans] ref|NP_001022682.1| M01A8.2a [Caenorhabditis elegans] sp|P34531|YM92_CAEEL Hypothetical protein M01A8.2 in chromosome III 0.0
blast S40998 hypothetical protein M01A8.2 - Caenorhabditis elegans 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000938 EMBL-EBI CAP-Gly domain 2.2E-29
Pfam IPR000938 EMBL-EBI CAP-Gly domain 2.2E-29
Trans Membrane
ID Number Of Domains Domain Boundaries
SNAP00000016676 2 10-27,34-56
Sequence
Target Sequence 
>C. ELEGANS:189451_S_AT
cttcaagtcgacgagattcctctcaaagagctcgaaatcagcaaatggaagcataagtct
aatgagtacaagcaaatgctggatcagaaaattaatggagaaaaaattctcgtccaacaa
attgaagatctgcggagaaaacagattcatgatgaggaggagaaggaggcgatgaaaaga
agttttgatttaatgcagtttaaatatgagaatggagatgatccgaatgttacaagcgtc
atgtcagctccaatggaaagtcgattcagcacaccaaccaaggtacaattccgatcaaga
tcttccgcatctggaagtcgtccaatctctatggcaacaagcaacggtggagaccagaga
ctttccacatcttcacatcacgacgatagtatgaatcgttcaacgatctcgatgtacacc
agccatattcgcctgccagaaaatcatgcagatgacgtaatttatgctccagatgagatc
atctcgagtaggagtggatctatatctcaacgacttgcaatttcaatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTTCAAGTCGACGAGATTCCTCTCA 640 221 2083 Antisense
ACAAGCGTCATGTCAGCTCCAATGG 456 113 2314 Antisense
AACCAAGGTACAATTCCGATCAAGA 710 147 2358 Antisense
GATCTTCCGCATCTGGAAGTCGTCC 217 419 2381 Antisense
GAAGTCGTCCAATCTCTATGGCAAC 75 337 2396 Antisense
TGGAGACCAGAGACTTTCCACATCT 420 549 2430 Antisense
TCAACGATCTCGATGTACACCAGCC 280 631 2482 Antisense
CAGCCATATTCGCCTGCCAGAAAAT 489 203 2502 Antisense
GATGACGTAATTTATGCTCCAGATG 4 413 2533 Antisense
GGAGTGGATCTATATCTCAACGACT 371 517 2573 Antisense
ATCTCAACGACTTGCAATTTCAATT 193 33 2586 Antisense
Sequence Source Affymetrix Proprietary Database