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[189449_at] 7TM receptor like

Description T21H8.4 /REP_DB=WormBase Gene ID /WP=CE16438 /TR=O62420 /GB=CAA19474.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=7TM receptor like
Cluster 6grp_total > 0      4grp_total > 09      6grp_total_sub > Hat      6grp_cgc > 54      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 52
1 2 3 4 range
A 20.3
(-0.7)
A 		9.5
(-2.6)
A 		7.4
(-3)
A 		41.2
(3)
A 		34
B 11.1
(-1.5)
A 		20.9
(0.1)
A 		2
(-3)
A 		39
(3)
A 		37
C 22.5
(-3)
A 		27.8
(-2)
A 		53.6
(3)
A 		52.8
(2.8)
A 		31
avr 18
(-3) 		19.4
(-2.7) 		21
(-2.3) 		44.3
(3) 		26

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 56
1 2 3 4 5 6 range
A 15
(-1.2)
A 		5.6
(-3)
A 		19.4
(-0.3)
A 		15.1
(-1.2)
A 		36.6
(3)
A 		6.2
(-2.9)
A 		31
B 33.7
(1.3)
A 		45.4
(3)
A 		20.6
(-0.6)
A 		3.5
(-3)
A 		29.3
(0.7)
A 		30.9
(0.9)
A 		42
C 5.8
(-3)
A 		59.4
(3)
A 		7.4
(-2.8)
A 		11.9
(-2.3)
A 		7.1
(-2.9)
A 		7.9
(-2.8)
A 		54
avr 18.2
(-1.2) 		36.8
(3) 		15.8
(-1.7) 		10.2
(-3) 		24.3
(0.2) 		15
(-1.9) 		27
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 7.4
(3)
A 		2.1
(-2.8)
A 		1.9
(-3)
A 		6
(1.5)
A 		6
B 3.5
(-0.7)
A 		5.2
(0.6)
A 		0.5
(-3)
A 		8.3
(3)
A 		8
C 7.5
(-3)
A 		8
(-2.7)
A 		18.7
(3)
A 		8.9
(-2.3)
A 		11
avr 6.1
(-0.7) 		5.1
(-3) 		7
(1.4) 		7.7
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 2.8
(-2.2)
A 		2
(-2.7)
A 		4.2
(-1.3)
A 		3.8
(-1.5)
A 		11
(3)
A 		1.5
(-3)
A 		10
B 11.7
(1.6)
A 		15.1
(3)
A 		5
(-1.3)
A 		0.9
(-3)
A 		11.9
(1.6)
A 		11.5
(1.5)
A 		14
C 2.1
(-2.9)
A 		18.1
(3)
A 		1.9
(-3)
A 		2.4
(-2.8)
A 		2.3
(-2.9)
A 		2.7
(-2.7)
A 		16
avr 5.5
(-1) 		11.7
(3) 		3.7
(-2.2) 		2.4
(-3) 		8.4
(0.9) 		5.2
(-1.2) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189449_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17700
Sequence Type Exemplar sequence
Representative Public ID T21H8.4 NCBI
Target Description T21H8.4 /REP_DB=WormBase Gene ID /WP=CE16438 /TR=O62420 /GB=CAA19474.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=7TM receptor like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077914(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077914 NCBI Caenorhabditis elegans Serpentine Receptor, class A (alpha) family member (sra-39) (sra-39) mRNA, complete cds. 11/11 None
SNAP00000010198 ENSEMBL cdna:SNAP chromosome:CEL140:X:13900985:13901822:-1 9/11 None
GENEFINDER00000010201 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:13900985:13901822:-1 11/11 None
T21H8.4 ENSEMBL cdna:known chromosome:CEL140:X:13900985:13903349:-1 gene:T21H8.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:13900984-13903349(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM receptor like
Gene Symbol sra-39
Ensembl T21H8.4
Entrez Gene 188708 Entrez gene
SwissProt O62420 EMBL-EBI
WormBase CE16438 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB01772 Hypothetical protein T21H8.4 [Caenorhabditis elegans] emb|CAA19474.1| Hypothetical protein T21H8.4 [Caenorhabditis elegans] ref|NP_510315.1| Serpentine Receptor, class A (alpha) family member (sra-39) [Caenorhabditis elegans] sp|O62420|SRA39_CAEEL Serpentine receptor class alpha-39 (Protein sra-39) 0.0
blast CAE63069 Hypothetical protein CBG07352 [Caenorhabditis briggsae] 1.0E-173
blast CAB01772 Hypothetical protein T21H8.4 [Caenorhabditis elegans] emb|CAA19474.1| Hypothetical protein T21H8.4 [Caenorhabditis elegans] ref|NP_510315.1| Serpentine Receptor, class A (alpha) family member (sra-39) [Caenorhabditis elegans] sp|O62420|SRA39_CAEEL Serpentine receptor class alpha-39 (Protein sra-39) 1.0E-126
blast CAB01769 Hypothetical protein T21H8.3 [Caenorhabditis elegans] ref|NP_510314.1| Serpentine Receptor, class A (alpha) family member (sra-38) [Caenorhabditis elegans] 1.0E-117
blast CAB01772 Hypothetical protein T21H8.4 [Caenorhabditis elegans] emb|CAA19474.1| Hypothetical protein T21H8.4 [Caenorhabditis elegans] ref|NP_510315.1| Serpentine Receptor, class A (alpha) family member (sra-39) [Caenorhabditis elegans] sp|O62420|SRA39_CAEEL Serpentine receptor class alpha-39 (Protein sra-39) 1.0E-104
blast CAE63069 Hypothetical protein CBG07352 [Caenorhabditis briggsae] 1.0E-104
blast CAE63069 Hypothetical protein CBG07352 [Caenorhabditis briggsae] 2.0E-83
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_510315.1 7 15-37,50-72,102-124,137-159,183-205,237-259,274-296
T21H8.4 7 15-37,50-72,102-124,137-159,183-205,237-259,274-296
SNAP00000010198 2 37-59,98-120
GENEFINDER00000010201 3 37-59,91-113,128-150
Sequence
Target Sequence 
>C. ELEGANS:189449_AT
cgacatgtcttacattttccgcttccaagtctatcggttctcgcgtatatgtaatgttct
ttgttcaactcctattagatgctgttatttcaatagttcacctggtcttatatcgataca
acaaaaacatcgataaacacggctctacttccttgtcagaacagttccagcgtaatgaga
atgtgaaaacattgaagcaagtgactccgttactaatattgtcgaacgttacgattgggg
tatacatcttcattgtttccgttttccggttatacaaagattatttaccgccaaactggt
atgaaataattgctgcgaatctgtttataatgcctcacatgcctttcatgtttacttccc
ttatacttgtcgaactatggttaggaaaaaagaggcaagaccgaattcacaaagatatga
tggctagtcaagatgtccctctcgatgatcagtttcatattgccatggaaaattgggacg
tccattttcagtcacg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGACATGTCTTACATTTTCCGCTTC 706 251 515 Antisense
TCCGCTTCCAAGTCTATCGGTTCTC 610 593 532 Antisense
AGTTCACCTGGTCTTATATCGATAC 148 63 609 Antisense
ACATCGATAAACACGGCTCTACTTC 540 101 641 Antisense
GCTCTACTTCCTTGTCAGAACAGTT 365 299 656 Antisense
TACATCTTCATTGTTTCCGTTTTCC 144 645 757 Antisense
TTATAATGCCTCACATGCCTTTCAT 54 681 839 Antisense
TGTTTACTTCCCTTATACTTGTCGA 358 559 863 Antisense
TGATGGCTAGTCAAGATGTCCCTCT 399 567 932 Antisense
TGTCCCTCTCGATGATCAGTTTCAT 507 555 948 Antisense
ATTGGGACGTCCATTTTCAGTCACG 244 3 986 Antisense
Sequence Source Affymetrix Proprietary Database