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[189445_at] 7TM chemoreceptor, str family

Description Y46H3D.2 /REP_DB=WormBase Gene ID /WP=CE24319 /GEN=str-221 /GB=AAK72305.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster 6grp_total > 40      4grp_total > 43      6grp_cgc > 83      6grp_cgc_sub > 03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 50
1 2 3 4 range
A 31.5
(-0.6)
A 		47.1
(3)
A 		37.9
(0.9)
A 		21
(-3)
A 		26
B 19.5
(-0.3)
A 		38.1
(3)
A 		11
(-1.8)
A 		4.2
(-3)
A 		34
C 7.5
(-3)
A 		54
(3)
A 		7.2
(-3)
A 		41.6
(1.4)
A 		47
avr 19.5
(-2.8) 		46.4
(3) 		18.7
(-3) 		22.3
(-2.2) 		28

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 54
1 2 3 4 5 6 range
A 20
(-0.6)
A 		14.9
(-1.4)
A 		43.1
(3)
A 		32.9
(1.4)
A 		11.5
(-2)
A 		5
(-3)
A 		38
B 44.9
(1.7)
P 		25.5
(-2.7)
A 		24.8
(-2.8)
A 		50.5
(3)
A 		24.1
(-3)
A 		25.6
(-2.7)
A 		26
C 8.5
(-2.5)
A 		57.9
(3)
P 		53.7
(2.5)
M 		29.3
(-0.2)
A 		8.9
(-2.4)
A 		3.7
(-3)
A 		54
avr 24.5
(-0.3) 		32.8
(1.4) 		40.5
(3) 		37.6
(2.4) 		14.8
(-2.3) 		11.4
(-3) 		29
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 11.5
(3)
A 		10.2
(2.1)
A 		9.9
(1.9)
A 		3.1
(-3)
A 		8
B 6.2
(0.7)
A 		9.4
(3)
A 		2.6
(-1.8)
A 		0.9
(-3)
A 		9
C 2.5
(-3)
A 		15.5
(3)
A 		2.5
(-3)
A 		7
(-0.9)
A 		13
avr 6.7
(-0.8) 		11.7
(3) 		5
(-2) 		3.7
(-3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 3.7
(-1.2)
A 		5.3
(-0)
A 		9.4
(3)
A 		8.4
(2.3)
A 		3.5
(-1.3)
A 		1.2
(-3)
A 		8
B 15.6
(3)
P 		8.5
(-1.4)
A 		6
(-3)
A 		13.4
(1.6)
A 		9.8
(-0.6)
A 		9.5
(-0.8)
A 		10
C 3.1
(-2.3)
A 		17.7
(3)
P 		13.7
(1.5)
M 		5.9
(-1.3)
A 		2.9
(-2.4)
A 		1.2
(-3)
A 		17
avr 7.5
(0.2) 		10.5
(3) 		9.7
(2.3) 		9.2
(1.8) 		5.4
(-1.7) 		4
(-3) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189445_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14892
Sequence Type Exemplar sequence
Representative Public ID Y46H3D.2 NCBI
Target Description Y46H3D.2 /REP_DB=WormBase Gene ID /WP=CE24319 /GEN=str-221 /GB=AAK72305.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071064(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071064 NCBI Caenorhabditis elegans Seven TM Receptor family member (str-221) (str-221) mRNA, complete cds. 9/11 None
SNAP00000018930 ENSEMBL cdna:SNAP chromosome:CEL140:V:1640137:1642116:1 9/11 None
GENEFINDER00000018936 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:1640137:1642116:1 9/11 None
Y46H3D.2 ENSEMBL cdna:known chromosome:CEL140:V:1640137:1641703:1 gene:Y46H3D.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:1640136-1641703(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, str family
Gene Symbol str-221
Ensembl Y46H3D.2
Entrez Gene 192032 Entrez gene
SwissProt Q966B3 EMBL-EBI
WormBase CE38243 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_503465 Seven TM Receptor family member (str-221) [Caenorhabditis elegans] gb|AAK72305.2| Seven tm receptor protein 221 [Caenorhabditis elegans] 0.0
blast NP_503465 Seven TM Receptor family member (str-221) [Caenorhabditis elegans] gb|AAK72305.2| Seven tm receptor protein 221 [Caenorhabditis elegans] 1.0E-180
blast NP_503464 Seven TM Receptor family member (str-222) [Caenorhabditis elegans] gb|AAK72306.2| Seven tm receptor protein 222 [Caenorhabditis elegans] 1.0E-140
blast NP_503464 Seven TM Receptor family member (str-222) [Caenorhabditis elegans] gb|AAK72306.2| Seven tm receptor protein 222 [Caenorhabditis elegans] 1.0E-133
blast AAB65377 Seven tm receptor protein 227 [Caenorhabditis elegans] ref|NP_503982.1| Seven TM Receptor family member (str-227) [Caenorhabditis elegans] 9.0E-75
Protein Domains
Database ID Description E-Value
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 3.7E-7
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 9.2E-19
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 4.0E-17
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503465.2 7 12-34,46-68,94-116,136-158,204-226,253-275,285-307
Y46H3D.2 8 12-34,46-68,94-116,136-158,204-226,254-276,286-308,329-346
SNAP00000018930 7 12-34,46-68,94-116,136-158,204-226,253-275,285-307
GENEFINDER00000018936 7 12-34,46-68,94-116,136-158,204-226,253-275,285-307
Sequence
Target Sequence 
>C. ELEGANS:189445_AT
gggatacgtattctgtgcaccaacacaggaagtcactgattttatcaaaaatagcatcca
cgttacttttggattggaagaatcagagtttgtgtatttggggccgagaatattcaaaga
gcacaatggtacgattacattcaatataaagccatcaatcggacttgctctgaacattat
gacgatgaacatatcattttttgcaatactctttttcggtctgaaatgttactattacat
gagaaaaatgatgagccaaagtggatcgtcaaagtcaataggcctccagcggcagctatt
ttttgcattggtggtgcaaactttgattccagtggttttaatgctttcaccgtttacgtt
tgctcttattttgtgcattttcgatattaatgatgatgttattggtggaatcgtggtgtt
gtgtattgctatttaccccgcaattgacccacttccgaatatttttattatcagagatta
taggagagcactattatgtaagttcggtgctttattcgatttgaaaaaaataaggtattt
attgggttgcactggttgccctttcccatttattaccttcgtcaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGGATACGTATTCTGTGCACCAACA 419 495 468 Antisense
AGAGTTTGTGTATTTGGGGCCGAGA 359 59 552 Antisense
GCCATCAATCGGACTTGCTCTGAAC 180 281 618 Antisense
TTTGCAATACTCTTTTTCGGTCTGA 4 669 667 Antisense
CGTCAAAGTCAATAGGCCTCCAGCG 244 245 734 Antisense
CCTCCAGCGGCAGCTATTTTTTGCA 78 267 750 Antisense
GATTCCAGTGGTTTTAATGCTTTCA 23 435 792 Antisense
ATGCTTTCACCGTTTACGTTTGCTC 15 43 808 Antisense
GTTGTGTATTGCTATTTACCCCGCA 409 437 885 Antisense
TATTGGGTTGCACTGGTTGCCCTTT 128 665 1007 Antisense
TTTCCCATTTATTACCTTCGTCAAT 203 671 1029 Antisense
Sequence Source Affymetrix Proprietary Database