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[189443_at] max protein like

Description T19B10.9 /REP_DB=WormBase Gene ID /WP=CE16416 /TR=Q22563 /GB=CAA98544.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=max protein like
Cluster 6grp_high1_10_10 > 91      6grp_total > 82      4grp_total > 41      6grp_high1_sub > 05      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 185
1 2 3 4 range
A 32.3
(-3)
A 		187.7
(3)
P 		138.2
(1.1)
P 		56.5
(-2.1)
A 		155
B 19.9
(-3)
A 		205.1
(3)
P 		144.1
(1)
P 		53.7
(-1.9)
A 		185
C 42.8
(-3)
A 		139.5
(2.3)
P 		151.3
(3)
P 		123
(1.4)
P 		109
avr 31.7
(-3) 		177.4
(3) 		144.5
(1.6) 		77.7
(-1.1) 		146

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 120
1 2 3 4 5 6 range
A 51.5
(-3)
A 		116.5
(1.1)
P 		97.2
(-0.1)
P 		119.3
(1.2)
P 		147.5
(3)
P 		54.7
(-2.8)
P 		96
B 62.5
(-2.1)
P 		76.3
(-1.4)
P 		75.6
(-1.4)
P 		160.2
(3)
P 		154.9
(2.7)
P 		45.8
(-3)
P 		114
C 57.9
(-2)
A 		80.6
(-0.8)
P 		75.2
(-1.1)
P 		91.9
(-0.2)
P 		151.3
(3)
P 		40.3
(-3)
P 		111
avr 57.3
(-2.4) 		91.1
(-0.5) 		82.7
(-0.9) 		123.8
(1.4) 		151.2
(3) 		46.9
(-3) 		104
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 46
1 2 3 4 range
A 11.7
(-2.4)
A 		40.7
(3)
P 		36.1
(2.1)
P 		8.3
(-3)
A 		32
B 6.4
(-3)
A 		50.7
(3)
P 		33.4
(0.7)
P 		11.4
(-2.3)
A 		44
C 14.2
(-3)
A 		40.1
(1)
P 		52.7
(3)
P 		20.7
(-2)
P 		39
avr 10.8
(-3) 		43.8
(3) 		40.7
(2.4) 		13.5
(-2.5) 		33

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 53
1 2 3 4 5 6 range
A 9.5
(-3)
A 		41.4
(2.5)
P 		21.2
(-1)
P 		30.2
(0.5)
P 		44.5
(3)
P 		13.3
(-2.3)
P 		35
B 21.8
(-2.4)
P 		25.4
(-1.9)
P 		18.4
(-2.8)
P 		42.4
(0.3)
P 		62.9
(3)
P 		17.1
(-3)
P 		46
C 21.4
(-1.7)
A 		24.6
(-1.1)
P 		19.2
(-2)
P 		18.5
(-2.2)
P 		49
(3)
P 		13.5
(-3)
P 		36
avr 17.6
(-2.5) 		30.5
(-0.5) 		19.6
(-2.2) 		30.4
(-0.5) 		52.1
(3) 		14.6
(-3) 		38
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189443_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13797
Sequence Type Exemplar sequence
Representative Public ID T19B10.9 NCBI
Target Description T19B10.9 /REP_DB=WormBase Gene ID /WP=CE16416 /TR=Q22563 /GB=CAA98544.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=max protein like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073456(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073456 NCBI Caenorhabditis elegans T19B10.9 (T19B10.9) mRNA, complete cds. 11/11 None
SNAP00000024751 ENSEMBL cdna:SNAP chromosome:CEL140:V:11251107:11253344:1 11/11 None
GENEFINDER00000024761 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:11250981:11253344:1 11/11 None
T19B10.9 ENSEMBL cdna:known chromosome:CEL140:V:11250734:11253454:1 gene:T19B10.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:11250980-11253344(+) 100.0 100.0
Public Domain and Genome References
Gene Title max protein like
Ensembl T19B10.9
Entrez Gene 179558 Entrez gene
SwissProt Q22563 EMBL-EBI
WormBase CE16416 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA98544 Hypothetical protein T19B10.9 [Caenorhabditis elegans] ref|NP_505857.1| T19B10.9 [Caenorhabditis elegans] 0.0
blast CAE75201 Hypothetical protein CBG23148 [Caenorhabditis briggsae] 0.0
blast NP_504473 CD4.5 [Caenorhabditis elegans] gb|AAB88343.3| Hypothetical protein CD4.5 [Caenorhabditis elegans] 2.0E-20
Sequence
Target Sequence 
>C. ELEGANS:189443_AT
gaacacattgaccaagcctattccatccaggccaattcgattgtcacctagaagagctga
aatggagcaactaatatccgagttgacagatgagcatggtgccaaggaagtagaaaatgc
tgaagatcgagatgaaccccaaagtgtttgcaagcttctaaattgtgattttgacagtga
catgtgcatgtacaacaattatgtgaatgagagcatgagtgtatctccgtggcaacttgg
cagtaatagaataggaaatccacacactggagtcagagaaggcagtggatttttatacgt
tggaaccgatagccctgcggattcaaaaatagtaaactatattttggaatctccggatct
ttcagtcgatgaagactttcatttgacaatggatatttaccgtcgttcaaatgatatcac
tcttcaaatttgtctcgatactccattttattgtccttatacagttactccattcga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAACACATTGACCAAGCCTATTCCA 66 353 1164 Antisense
GCCTATTCCATCCAGGCCAATTCGA 189 281 1179 Antisense
GCCAATTCGATTGTCACCTAGAAGA 10 277 1194 Antisense
GAAGATCGAGATGAACCCCAAAGTG 404 335 1285 Antisense
GAGCATGAGTGTATCTCCGTGGCAA 282 389 1374 Antisense
TGGAACCGATAGCCCTGCGGATTCA 13 547 1464 Antisense
AATCTCCGGATCTTTCAGTCGATGA 174 169 1511 Antisense
ACAATGGATATTTACCGTCGTTCAA 385 113 1549 Antisense
GATATCACTCTTCAAATTTGTCTCG 457 425 1576 Antisense
ATTTGTCTCGATACTCCATTTTATT 122 19 1591 Antisense
GTCCTTATACAGTTACTCCATTCGA 94 477 1616 Antisense
Sequence Source Affymetrix Proprietary Database