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[189442_at] similar to PES-10

Description R06A4.6 /REP_DB=WormBase Gene ID /WP=CE18113 /TR=O62331 /GB=CAB05585.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=similar to PES-10
Cluster 6grp_total > 67      4grp_total > 11      6grp_cgc > 47      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5
1 2 3 4 range
A 2.2
(-3)
A 		3.1
(0.9)
A 		3
(0.4)
A 		3.6
(3)
A 		1
B 5.2
(0.5)
A 		4.5
(-0.4)
A 		2.6
(-3)
A 		7
(3)
A 		4
C 3.4
(-3)
A 		3.8
(-1.7)
A 		4.1
(-0.7)
A 		5.2
(3)
A 		2
avr 3.6
(-1.9) 		3.8
(-1.3) 		3.2
(-3) 		5.3
(3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 5
1 2 3 4 5 6 range
A 4.1
(-0.5)
A 		2.1
(-3)
A 		2.6
(-2.4)
A 		2.2
(-2.9)
A 		2.5
(-2.5)
A 		6.9
(3)
A 		5
B 2.9
(-1.7)
A 		2.5
(-2.6)
A 		5
(3)
A 		2.3
(-3)
A 		3.1
(-1.2)
A 		2.6
(-2.3)
A 		3
C 2.7
(-1.6)
A 		3.8
(2.3)
A 		3.1
(-0.2)
A 		3.5
(1.2)
A 		2.3
(-3)
A 		4
(3)
A 		2
avr 3.2
(-1.1) 		2.8
(-2.4) 		3.6
(0.2) 		2.7
(-2.7) 		2.6
(-3) 		4.5
(3) 		2
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1
1 2 3 4 range
A 0.8
(3)
A 		0.7
(1)
A 		0.8
(3)
A 		0.5
(-3)
A 		0
B 1.7
(3)
A 		1.1
(-0.3)
A 		0.6
(-3)
A 		1.5
(1.9)
A 		1
C 1.1
(-0.6)
A 		1.1
(-0.6)
A 		1.4
(3)
A 		0.9
(-3)
A 		0
avr 1.2
(3) 		1
(-1) 		0.9
(-3) 		1
(-1) 		0

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1
1 2 3 4 5 6 range
A 0.8
(-1.9)
A 		0.8
(-1.9)
A 		0.6
(-3)
A 		0.6
(-3)
A 		0.7
(-2.5)
A 		1.7
(3)
A 		1
B 1
(1)
A 		0.8
(-1)
A 		1.2
(3)
A 		0.6
(-3)
A 		1.2
(3)
A 		1
(1)
A 		1
C 1
(0)
A 		1.2
(2)
A 		0.8
(-2)
A 		0.7
(-3)
A 		0.8
(-2)
A 		1.3
(3)
A 		1
avr 0.9
(-0.4) 		0.9
(-0.4) 		0.9
(-0.4) 		0.6
(-3) 		0.9
(-0.4) 		1.3
(3) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189442_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3359
Sequence Type Exemplar sequence
Representative Public ID R06A4.6 NCBI
Target Description R06A4.6 /REP_DB=WormBase Gene ID /WP=CE18113 /TR=O62331 /GB=CAB05585.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=similar to PES-10
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064590(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064590 NCBI Caenorhabditis elegans R06A4.6 (R06A4.6) mRNA, complete cds. 11/11 None
SNAP00000043983 ENSEMBL cdna:SNAP chromosome:CEL140:II:14381662:14383199:1 11/11 None
GENEFINDER00000043987 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:14381662:14383774:1 11/11 None
R06A4.6 ENSEMBL cdna:known chromosome:CEL140:II:14381518:14383200:1 gene:R06A4.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:14381514-14383196(+) 99.57 100.0
Public Domain and Genome References
Gene Title similar to PES-10
Gene Symbol sdz-26
Ensembl R06A4.6
Entrez Gene 175095 Entrez gene
SwissProt O62331 EMBL-EBI
WormBase CE18113 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB05585 Hypothetical protein R06A4.6 [Caenorhabditis elegans] ref|NP_496991.1| R06A4.6 [Caenorhabditis elegans] 0.0
blast CAB05585 Hypothetical protein R06A4.6 [Caenorhabditis elegans] ref|NP_496991.1| R06A4.6 [Caenorhabditis elegans] 1.0E-172
blast CAA21693 Hypothetical protein Y57A10B.6 [Caenorhabditis elegans] ref|NP_496629.1| Y57A10B.6 [Caenorhabditis elegans] 3.0E-31
blast CAA21693 Hypothetical protein Y57A10B.6 [Caenorhabditis elegans] ref|NP_496629.1| Y57A10B.6 [Caenorhabditis elegans] 2.0E-28
blast CAB60370 Hypothetical protein Y46G5A.27 [Caenorhabditis elegans] ref|NP_496732.1| Patterned Expression Site family member (pes-10) [Caenorhabditis elegans] sp|P41991|PES10_CAEEL Protein pes-10 gb|AAA50369.1| PES-10 3.0E-21
blast CAB03926 Hypothetical protein C27C7.7 [Caenorhabditis elegans] ref|NP_492917.1| C27C7.7 [Caenorhabditis elegans] 4.0E-15
Protein Domains
Database ID Description E-Value
Pfam IPR009819 EMBL-EBI Pes-10 1.8E-75
Pfam IPR009819 EMBL-EBI Pes-10 1.0E-126
Pfam IPR009819 EMBL-EBI Pes-10 1.0E-126
Pfam IPR009819 EMBL-EBI Pes-10 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_496991.1 1 7-23
R06A4.6 1 7-23
Sequence
Target Sequence 
>C. ELEGANS:189442_AT
ttcgatcagacagagctgctcccaaaacttctcgataatctccacttgcatggtgatcaa
gaggaagggcactacaaaatgatggagaattatgagtgggccctttgggaagttctcatg
gtgcacctggtgcaatcaattaagactgggaatcgacgagtgatcacaagagccataatc
caccaccaagagcaccggtttccactggcactttacagaaaatacgagatccaatcactg
atccgagctcttcctcgtaagatctcagctgcttcacaactatttgatgagatcgagcta
attgaggagtccacattgaattcccagcatattgaagctttccgggaggtgaaaaaagct
gtgaacggaatggaagaaggagaagaagcatggccagtgctcatgtctttgatgatggga
ttcttgaagcaagacgatggatttgttcacggagccg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCGATCAGACAGAGCTGCTCCCAA 390 695 586 Antisense
AAACTTCTCGATAATCTCCACTTGC 104 129 610 Antisense
GAGTGGGCCCTTTGGGAAGTTCTCA 200 401 679 Antisense
AGTTCTCATGGTGCACCTGGTGCAA 599 63 696 Antisense
CGGTTTCCACTGGCACTTTACAGAA 458 243 781 Antisense
GATCCAATCACTGATCCGAGCTCTT 229 415 813 Antisense
AGCTCTTCCTCGTAAGATCTCAGCT 152 81 831 Antisense
ATCTCAGCTGCTTCACAACTATTTG 225 33 847 Antisense
GAGGAGTCCACATTGAATTCCCAGC 431 403 889 Antisense
GAAGCATGGCCAGTGCTCATGTCTT 690 341 970 Antisense
GACGATGGATTTGTTCACGGAGCCG 170 379 1018 Antisense
Sequence Source Affymetrix Proprietary Database