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[189438_s_at] acid phosphatase

Description F14E5.4 /REP_DB=WormBase Gene ID /WP=CE03207 /TR=Q19461 /GB=CAA91407.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=acid phosphatase
Cluster 6grp_total > 84      4grp_total > 11      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 106
1 2 3 4 range
A 80.2
(-3)
A 		135.4
(1.7)
P 		86.7
(-2.4)
A 		150.5
(3)
A 		70
B 86.2
(1.1)
A 		50.7
(-2.4)
A 		44.3
(-3)
A 		105.8
(3)
P 		62
C 98.4
(-1.5)
A 		82.6
(-3)
A 		108.1
(-0.5)
P 		144.4
(3)
P 		62
avr 88.3
(-2) 		89.6
(-1.9) 		79.7
(-3) 		133.6
(3) 		54

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 297
1 2 3 4 5 6 range
A 52.9
(-3)
A 		118.5
(-1)
A 		110
(-1.2)
A 		246.8
(3)
P 		246
(3)
P 		175.4
(0.8)
P 		194
B 69.8
(-3)
A 		109.9
(-1.7)
M 		84.3
(-2.5)
P 		239.5
(2.5)
P 		256.1
(3)
P 		180.3
(0.6)
P 		186
C 37.7
(-3)
A 		127.3
(-1.2)
P 		88.9
(-2)
A 		334.4
(3)
P 		232.1
(0.9)
P 		228.8
(0.9)
P 		297
avr 53.5
(-3) 		118.6
(-1.2) 		94.4
(-1.9) 		273.6
(3) 		244.7
(2.2) 		194.8
(0.9) 		220
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 27
1 2 3 4 range
A 29.2
(2.8)
A 		29.4
(3)
P 		22.7
(-2.4)
A 		22
(-3)
A 		7
B 27.5
(3)
A 		12.5
(-2.2)
A 		10.3
(-3)
A 		22.6
(1.3)
P 		17
C 32.6
(0.8)
A 		23.7
(-3)
A 		37.7
(3)
P 		24.4
(-2.7)
P 		14
avr 29.8
(3) 		21.9
(-3) 		23.6
(-1.7) 		23
(-2.2) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 94
1 2 3 4 5 6 range
A 9.8
(-3)
A 		42.2
(0)
A 		24
(-1.7)
A 		62.6
(1.9)
P 		74.2
(3)
P 		42.7
(0.1)
P 		64
B 24.3
(-2.7)
A 		36.6
(-1.8)
M 		20.5
(-3)
P 		63.4
(0.1)
P 		104
(3)
P 		67.2
(0.4)
P 		84
C 14
(-3)
A 		38.8
(-0.6)
P 		22.6
(-2.2)
A 		67.3
(2.1)
P 		75.1
(2.9)
P 		76.6
(3)
P 		63
avr 16
(-3) 		39.2
(-1) 		22.4
(-2.4) 		64.4
(1.2) 		84.4
(3) 		62.2
(1.1) 		68
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 189438_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3801
Sequence Type Exemplar sequence
Representative Public ID F14E5.4 NCBI
Target Description F14E5.4 /REP_DB=WormBase Gene ID /WP=CE03207 /TR=Q19461 /GB=CAA91407.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=acid phosphatase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063373(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063373 NCBI Caenorhabditis elegans F14E5.4 (F14E5.4) mRNA, complete cds. 11/11 None
SNAP00000024806 ENSEMBL cdna:SNAP chromosome:CEL140:II:8429973:8431835:-1 11/11 None
GENEFINDER00000024811 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:8429973:8431835:-1 11/11 None
F14E5.4 ENSEMBL cdna:known chromosome:CEL140:II:8429797:8431852:-1 gene:F14E5.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:8429969-8431832(-) 100.0 100.0
Public Domain and Genome References
Gene Title acid phosphatase
Ensembl F14E5.4
Entrez Gene 174343 Entrez gene
SwissProt Q19461 EMBL-EBI
WormBase CE03207 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
3993 acid phosphatase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA91407 Hypothetical protein F14E5.4 [Caenorhabditis elegans] ref|NP_495774.1| F14E5.4 [Caenorhabditis elegans] 0.0
blast CAE57681 Hypothetical protein CBG00675 [Caenorhabditis briggsae] 1.0E-133
blast CAA91406 Hypothetical protein F14E5.3 [Caenorhabditis elegans] ref|NP_495776.1| F14E5.3 [Caenorhabditis elegans] 9.0E-60
Protein Domains
Database ID Description E-Value
Pfam IPR000560 EMBL-EBI Histidine acid phosphatase 9.1E-9
Sequence
Target Sequence 
>C. ELEGANS:189438_S_AT
accactcatcgctcaacatataaacgaaatcatgggtatttatgtgaatgtgacccagtt
tatcacaggaactggtaatcatcatgacccgcgaatgatgaaggtcaaatttggaaatct
tatgaacacgttgctaacggacattaaaaataagatatacatggataaagaagagaaaca
caagagtgatggaagagtatccagaagggagaagttggcagtgtactctacgcaagactg
gattctaatgggagtgctcgattcattgaatgtgttggaacaaactgttggactcgacaa
atatcccgaatacaactcaatgatcatatttgaaacgtggaaggataatggaaaatattt
tgtgaaagttttctataaaaaagaagagatcactgccgaggatcatgagctaatagatgt
caccaaatttgtgagaaactgtaaaagagaacgatgtttggcacaggatttcctcgactg
ctgcgatgattatcgaaacaaaggtgaagctgagagttgtgaagcatctgatttaaagat
tcgaaccacgagaagctctccacctaataatatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACCACTCATCGCTCAACATATAAAC 609 85 624 Antisense
GAACTGGTAATCATCATGACCCGCG 222 347 692 Antisense
GAAGTTGGCAGTGTACTCTACGCAA 512 335 834 Antisense
GTACTCTACGCAAGACTGGATTCTA 382 459 846 Antisense
TGGGAGTGCTCGATTCATTGAATGT 486 553 872 Antisense
GGAACAAACTGTTGGACTCGACAAA 157 529 900 Antisense
ATCACTGCCGAGGATCATGAGCTAA 38 29 1012 Antisense
GATGTTTGGCACAGGATTTCCTCGA 161 409 1076 Antisense
ATTTCCTCGACTGCTGCGATGATTA 489 17 1091 Antisense
GATTCGAACCACGAGAAGCTCTCCA 276 433 1161 Antisense
GAGAAGCTCTCCACCTAATAATATT 606 391 1173 Antisense
Sequence Source Affymetrix Proprietary Database